RNA id: TU109232


Basic Information

Item Value
RNA id TU109232
length 282
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G96048
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5756097 ~ 5756378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAGGAACTTCGCTACCAAACACCTTTTTTTTCTGCAATTAAGCAAACTTTTTTGGGTGTTATTCCATACTAATTAGTTTTTATGTGTGTACAACTGTTCAGAACTGTGCTAGCTAATCATGTGCTGATTAGCATCTTTGAGCTAGGCTCAAAAGTATCTAAAAGTATACTAAAAGTATCTATAAAAAAAAAGGAACACATAATCATTTATTTGGGGGAAATAAACAAAACTTTAGTACAGTTATGCAAATCATTAGTATTTTAATATGTTTTAGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109231 lncRNA upstream 203 5755638 ~ 5755894 (+) True G96047
TU109217 lncRNA upstream 23634 5732257 ~ 5732463 (+) True G96035
TU109216 lncRNA upstream 29022 5726845 ~ 5727075 (+) True G96034
TU109105 lncRNA upstream 102462 5649852 ~ 5653635 (+) True G95933
TU109088 lncRNA upstream 140607 5610878 ~ 5615490 (+) True G95918
TU109256 lncRNA downstream 19682 5776060 ~ 5776310 (+) True G96058
TU109274 lncRNA downstream 166383 5922761 ~ 5922984 (+) True G96076
TU109134 lncRNA downstream 167799 5965086 ~ 5965357 (+) True CI01000016_05966893_05982233
TU109277 lncRNA downstream 174014 5930392 ~ 5934791 (+) True G96079
TU109149 lncRNA downstream 227687 5984065 ~ 5984824 (+) True G95967
CI01000016_05698858_05706081.mRNA mRNA upstream 49378 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05488887_05502270.mRNA mRNA upstream 253747 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05475350_05482964.mRNA mRNA upstream 272151 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05445824_05454816.mRNA mRNA upstream 300681 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 348134 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05797506_05798075.mRNA mRNA downstream 41128 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 72020 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
CI01000016_05837368_05837667.mRNA mRNA downstream 80205 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05878037_05885761.mRNA mRNA downstream 121659 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
CI01000016_05891870_05892528.mRNA mRNA downstream 135492 5891870 ~ 5892679 (+) True CI01000016_05891870_05892528
TU109033 other upstream 348234 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 348234 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 530156 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 919442 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1482192 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1404263 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2027687 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2257985 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3239720 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4039253 9795631 ~ 9795684 (+) True G99016

Expression Profile