RNA id: TU110589



Basic Information


Item Value
RNA id TU110589
length 4291
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G97185
representative False

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5881377 ~ 5887097 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTACTTTGCCGTCAATCAACCAGTGCAGACAGGAAAGAGTATCTTGCAGTCCTCCTCAGGGCGACACTTACACCTACACACCACATTTGACTAAATACATTCTTTATTTAACCTGCATTGATGGCTTGTTACAAATTTTTAAATCTAAAAAAAATTTGTACATCCAAGATACCTAAATATTTATATATACTGTGTGTGTGTGTGTGTGTGTGTGTTCATGTGTATAGTGATATATCACTTCTGCTCTGGACTGTGTACATTAATATAGAAGGAAATAACCTGATCCTTTCAGTTACGCTAATACAACTGTGAAACACTAGAGTTTCCTTATGTAAGAGGCGCGTATGCTGAGGGTAAATGTTAGAAGTGTTTATTACGACTTGAGGTCTTTAAAACAAGTTGTAAAAACTGTATGGGTTTAGGGGCGATTGCTAAATATTTCAGAAACTCAGCAATTAAAGGGCCAGTTCACCCAAAAATGAAAATTCTGTTATGATTTACTTACCCTCATGTTGTTCCAAACCTGTATGACTTTCTTTAAAGATATTTTGAATAATGTTACTATAAACTATTTTTATAGTTAATATTAATCTCATTAACTATTTTTTTCCATACAATGGAAGTCAGTGGGGTCCAAAAAATACACTGGACTCCCTTTTTTTTGCATGGGGAGAAAAAACATTTAGACAGTTATCAGAATATCTTCTTTTGTGTTCCAAAAGAAATGTCAAAATTCTTCACTACAAGATGATCACGATAGACATCAGTAGCTGGAATAATCACATTGCACTAATTAATTACAGTACTTAATAAAAAAAAAATTAAAAAAAAAATGTAAGTAGCACTTTGATTTACAAGCAGCACACAGTCTTTATTTAGCATGTGTGAGTTTAAAATCCATTTATTTAAAATAAGTTAACAAATAAGGATAAATAAAACTGCTAATTAAACAAATTTTCTCTTAGACAAGTCAGATGAACAGAGATATGTGACGATGACGTGAATTATAAAGGGCACAAAACAGTATCATGTCAATTGATACTCTGCCTAGTTCCCATGAAGTCAGTGGACCATATGCAATTTTAGACATAGTGAAAAAGACAGAAAATGGACGTGTCTAGTCATGACGGTAAAACAACATTCCATTTAAATGCACATGTCTAAGTAAAAGTTTTTGAGGCTTCAATCACAATGATAGCTTTTACTTTCTCTCTGTACCATGCAGAAAAACACATTCTCAGGCTTGACCCCCTTTTCCCGTAAAACGCACCCACACATTCTTTTCATCTAACTTTAGCAATGAGTCTATTGTCCCCTTCCTCTCGCTCTCTCTTTCTCACTGGCTCAGAGTTCTCTCTCCACCTCTGACTGCTGTCATCAGATGGCTCTTGTAGAGCTTGCTGAGTCCTGTCATCCAAAACTTAAGAAGACGCACATTGTCCTCTTCTCCGGGCCCCGTGGCCCCCAGCAGGGTTAAAACCTTCTGAGTGTCCTCTTTACCTCTGCCATCCACCTTGGAGAACTTAAACAACACTTTTACTTTGCTGTAACAGAGAGAACAATAAGAGCATGTGGTGAGAGGAAGCACAGAAGGTTAGCAAGAGAACAATAAACAGATATGATGAAAAAAGTACAAAGAGGAAATTTGGTAAGTGAATAAGAAAGAGGAAAAAGGAGATTTACTGGAAAAAGGTAAACAGACAAAAGTCCCAAATTTCAGGCCCTATTTTGTACCCAATTGTGGAAAGTGCCTTAAATAAACACTGTAACAGTACTTCACATTTCATTCAACAAATTTTTCAACAAGTTTTCATTTTAGATGTCATTCAAAAGTTTGTTTTAAGAAAGAAATTAATACTTATTCAGCAAGGAAGCTTTAAATTGATCAAAAGTGGCAGTACAGACATTTATAATGATACAAAAGATTTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTCTATTCTACAAAGAATCCTGATGTATCTCACTTTCCTCATGAATATTAAGCAGCAAAACTGTATTCAACTGTGATAATAATAGGAAATGTTTCTTGAGCAGCAAATCATCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCCATCACTGGACTAAATGACATTTAAAAAAATATATTACAATAGAAAACAGTTATTGTAGGAATATTACACAATATTACTGTTTTACTGTATTTTTTGATAAGATAAATGCAGCCTTCGTGAGCATAACAGACTTCTTTCAAAATCTTACTGATCCAAACTTTTAAATGGTAGTGTATATAATATATACACCTACTGTATATATACAAAAGTAATAAATTAGACAAAATTATATAAATCAAAATGAAAAGCAAGTACTCTTGAGCAAGTATTTTGGATATATTAGTGGATATTGTGTTTGGAATAAAGACTGTCATCAGTTTCTAATGGCTCTGAAGGGATATATTTTATAATAAAAATAGAAATTGTATATATATATATATATATATGTAAGAAAAAATGCTAATTTACTTCATCCACTCCTCTTTCAGACAGAGCAGGCAGAGAGAGACCACCTCCACCGACAGATTCTCATTAGAAAGAGCCACTTCAATCTTATTCAACAGAGTTGGACTTTATCCGTTGGTTGCGTGTTGGCACTGCTAATGTTGAACTGGTAAAGTGAGAGAATGTCATCATCCGAAACAGGATTTACACAACCGCGCTCAACGTTAAGTACATCCACCAGCACTGAAAACTCTGGAAGACAGATTGAGAGAAAGAAAGAGGGAGAGGGGTTACACCATTAGGATACTCAATGAGTGTTGAACTTTGAGATGAACTTGACACGGAGTTATGAAACAATTTCACTATGTTTAGAAAGAAAACAGTCACACAGAAGTTGAGAAATACGATGTAAATCACATTCTGACAAAGAACACACCAAAACACTTTGTTTGAGGCCTCTGTTACATCCATATGTGTTTGTCTTGATTAAAATAAAATAAAATCATGTTATAAAAACAGTATGTTTGATGGATAAAGATTACGACAGCACTACTGCCATTTCTCAGTGTGACTTATGCATAGTGTTACTGTTTATGTATGTTTGACCCCAAGAAATCTCAGATACGGCAGCGCCACAAGGATGGGATCAGAATAAAATAGGTTAATGGGGCTCAAATCCCTCAGGGCTTGGATCTTAAGTTTATTTTAATGTGGTGTAGACATACAGTATGTTTTCTGAAGGGTAAATTAACTAGCTGTGTCAAGCAAAAATATACAAAAGAGGGATTGCAGTGAAACATTTAAGAAACAGCACATTCTTTTACAGTACAGTACCTGAAGAGCTGACATGGGCTGGGATTGGTACATCTGGGCTAAGGCCAAGGAAGTTACATCGATATGCTTCCTCATAGTGAGGACTGTACGGAACTGCTCGGACACAGCCAACGGGAAGCAAAGCCTGTGAAATGGTCAGAAATCTGAGTTCAGGATACTTATATGAAACAAATTCAGTCAAGGGTGTCCAAACTTTTGACTGGTAGTGTATACATATAACACAGATGTGCTTTAAAGGTGTAGACCTGGAATCACTTGATTAGTGTGATGGAAATATTGTAAACATAGGTTTTCAGCTGACCTTTAGCACATTGAAAGCTGACTGGATAAGACAAGGGTCTGCACCTCTCCATATGACTTGGTTTCCCATGAGAACGTGCCATGTCAGCTGTCTGAAATCTGTGGTACCCAGGACCTGCCAATTAATCCAATATAGCATAGTCAAATTTAATATTTATAGTTTTATTTTTAACTGATGTTGGAAACAGAGTAAACATTTATTTGCCTGTCTTAAATGTCTCAATGATTTGAACTTCGGCCCAATGAGGTCCTCTTGTCTTCCATCATCAAATTGAAAGTCTTTCGCCTGTACACTCTCTGATTGACTGGGCTGTGAGTTAGAGCCGCCTCCTTCAGCACCATCCCAGGCACTCATCTCTTCCTCTTGCTCTGTGAGAGAATTATACACAATGTTGTTGTGAACCTTTTTGAAAGCTGAACTCTACATTATAACTTTACAGTAAAACCTCAGGATATGCCGAGTCATTGCTATTATTCTGATTATAAAAGATGAACAAAGTTGGACAATCACTGGAGAGCTGTTTGTTTGCCAGTCTCAGGAGCAGAACGTTGGAAAAGGAAAATGTGGGCCAGACACTCAGTTTAACAGTTGAAAAATCAATTTGTTAGTAGGCACACTAATTAAAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110692 lncRNA downstream 47767 5834570 ~ 5834911 (-) True G97255
TU110689 lncRNA downstream 105010 5777404 ~ 5777668 (-) True G97252
TU110652 lncRNA downstream 309109 5566293 ~ 5573569 (-) True G97215
TU110640 lncRNA downstream 316525 5565197 ~ 5566153 (-) True G97203
TU110571 lncRNA downstream 328692 5553295 ~ 5553986 (-) True G97180
TU110601 lncRNA upstream 584 5887681 ~ 5923379 (-) False G97188
TU110602 lncRNA upstream 584 5887681 ~ 5893310 (-) False G97188
TU110606 lncRNA upstream 584 5887681 ~ 5893310 (-) True G97188
TU110618 lncRNA upstream 7557 5894654 ~ 5908304 (-) True G97191
TU110723 lncRNA upstream 65861 5952958 ~ 5959473 (-) True G97282
CI01000016_05871353_05874812.mRNA mRNA downstream 7866 5871184 ~ 5874812 (-) True CI01000016_05871353_05874812
CI01000016_05843077_05863364.mRNA mRNA downstream 19314 5842120 ~ 5863364 (-) True CI01000016_05843077_05863364
CI01000016_05824628_05826424.mRNA mRNA downstream 56254 5823123 ~ 5826424 (-) True CI01000016_05824628_05826424
CI01000016_05804456_05811231.mRNA mRNA downstream 71447 5803128 ~ 5811231 (-) True CI01000016_05804456_05811231
CI01000016_05793987_05797545.mRNA mRNA downstream 85133 5793973 ~ 5797545 (-) True CI01000016_05793987_05797545
CI01000016_05910340_05911197.mRNA mRNA upstream 23155 5910252 ~ 5912172 (-) True CI01000016_05910340_05911197
CI01000016_05930860_05934507.mRNA mRNA upstream 43756 5930853 ~ 5934507 (-) True CI01000016_05930860_05934507
CI01000016_05945614_05946695.mRNA mRNA upstream 58462 5945559 ~ 5948309 (-) True CI01000016_05945614_05946695
CI01000016_05986400_05994821.mRNA mRNA upstream 99303 5986400 ~ 5994821 (-) True CI01000016_05986400_05994821
CI01000016_06018338_06023791.mRNA mRNA upstream 131233 6018330 ~ 6023791 (-) True CI01000016_06018338_06023791
TU110396 other downstream 464461 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 551832 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 959274 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 1951627 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 2217365 3635607 ~ 3665313 (-) True G96628
TU110786 other upstream 271889 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 3001736 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 3049692 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 3347899 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 3369005 9256102 ~ 9257611 (-) True G98691

Expression Profile