RNA id: TU110602



Basic Information


Item Value
RNA id TU110602
length 5387
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G97188
representative False

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5887681 ~ 5923379 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTAATTTTAAGATTTTATTTATATATAAAAATCTACATGTAAAAACTGACAACACATGTACACCAAAAACAGACAGATTGTTAAATTCATTTGAGTAAAACATTGTAGTAGTAACCTTCTCTAAGACAAAACAACAAAACTTGTAAACATGATTTGTGTAACCCTTTTGCAAATGACTTTTCTTTTTCTGAAAGTAGCAGGTGCTGTGGTTCCTATTCTACAGTTGTGTTTAAAATGGCTTGAATTTACTGTAGTACATGAGTGTTGTTGTTTCCTCTTGAACACTGGCCGAAAAGCGGAGACTTTTGGCTTCATGTATTCTTTACTTTTTCACTACATTCAATGTTAAAACATTCAGTCAACAGGTTTTACCTGAATTATCATAGATGACACATAATTCACTGTATAAGATGATAGAAACACTGGATAAGTGATAGAAACAATCAGTGCAAAGACATGGTGCAGAAAAAACATCATACATAAAAAAGAGAACATCATATTAGCCATGTGTGTGTTTCCAAAACATTTCTTTTCTCCAACAGCAGCTTATCCATAACTGCATCCAGAAATCATGAGCCACTTTATCCAGAGAGCAACTTCTTTGAAACCTCATGCAAATGCCAAGCTTTTTTATCTGTGTAAAACAAAATTAGCATCCAAACTGATCAAAATTAGCATCCAAACTGACTTAAAGTCAAGGCAACACAGTGTAGCAGTCCTTTCCAAGTGGAGCCTTCTTTTGGCCAAGTTTTGTGGCATATTTAAAACAGATTTCTTGACTTTCACCAGATCAGACTGGATGTTATCCATAGAAAAGATAAGCTCCAGTGAGTGAAGCCAGTGCAACATGTCTTAGTATAGCTGTTGGTCGGACCAGGGTCAAGCTGTTTTTCTGTCTTTATCTCTCCTTCTATCACAGGATGTTGATCATCCACCGGTTCACGTTTCTCCACATTCTCTTCCTCCTTTGGATTTTCTTGATCCTCTTCATTTGGTGTGGGGAAGTTGCAGTGATGCTCTCCAAAAGCACAATTCAAATTGAGCCATTGTGTGAAGAAGGATGAAGTTAAGGAGAGAAGTCCTTCAGGCGATGACTGAACAGATGGGAAGTCATAAAGATCTGGCCGATCCGGGAATTTCTGTTTCCAAAAAAATAAAAAAATAAACACTGACTTCAATATGTAATACAGATCTACAATCTGTCATGCCTATGACCAAGAATGAAAAACTTACTGATACAACCTCTGATAAAACAGTATAGCAGCAAGAAGTATTGTATGATCAAAGCGTGTTACAAATAAATAATTGTATATGATGATATACCACTTTTGCTATGTTGTCCAGCGTGTAAATCAGCTCACTGATGAACCTGTACTTGAGGTGAACTCTACTGAGGTGCTGGAGGAGCTGACTCCAGGAATTAGACAGGAACACAGCAGCACTGAACACACAGCACTAAACTCACACACACACACACAAAACAGATGTAATTTTGAGCAAAATTAGGATGGCTGAGATGATAAACCAGGAGAAATTCTAGTTTTAAAAACACATGATAGGTTCTTAGAAATGTGATCTATCTATTCTTGTTATTTTCATACATTTGGGGCAAAGATATACCATATTCAACAGATCATTTTGATTTAATGACTCAAAATGACTAAAAATGTCATATGGTGTAACCATCAAGCATAGGATACATAAATAGCCTACTTTCCTTTCACCTTAATTTTCAAGAGTGTACACAATTTAATCATTATTGTCAAACAATTTGTCAAACATGTTTCAAAGTACTTTTTTTTGTCATGAATATAATGGTGTCTTATAGGGTTAGTTCACCCAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCGTTCTACACCTGTAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATAATTTTGATAAAATCCGATGGCTCAGTGAGGCAGTGTTGCCAAGTCTGTGGTTTTCCCACGGAATTGGGCTACTTTTACACTGTTGCCGTGGGTTGTTTTTCATGTCCGCGGGTTGAAGCGACCTGAGGAGCCCCGCCAAAAACGTAGATTTTCCCCCCGGAACGTGATTTTTACTGTGGGACCCCCGTGAAACGTGATTGGGCTAGTTTTGAGTTGCAATTGGGTGGGTTTTGTTGTGAAAACTTGGCAACCCTGCAGTGAGGCCTCCATTGCCAGCAAGTTGATTAACACTTTCAGATGCCCAGAAAGGTGCTAAAAACATATTTAAAACAGTTCATGTAAGTACAGTGCATGGTTCAACCTTAATATTATAAAGCGACGAGAATACTTTTTGTGCGGCAAAAAAACAAAATAACTTTTTAACAATATAGTAATGGACGATTTTAAAACACAGTGGTTCGGAGCACGTATCAAACTGCCAAAGTCACGCGAACCATTGAAATTTTGAAACACTTATGACGTTACAAAGCCTTATTTACTGAAATCACGTGACTTTGGCGATAAATGACTTTTGTCATAAAGTCATTATTTAGATTTTTTTTGGGCGCACAAAAAGTATTCTCGTCACTTTATAATATTAAGGTTGAACCACTGTAGTCACATTAACTGTTTTAAATATGTCTTTAGTAGCTTTCTGGGCATCTGAAAGTGTTAATTATCTTGCTGGCAATGGAGGCCTCACTGAGCCATCGGATTTCATCAAAAATATCTTCATTTGTGTTTCGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTAAATAATAGATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTATGGTTACTCAATCTGGCCTAGGGCTGGGCCAAAAAGTCTTATCTCTGTATTTTTTGGCTAAATGGTGATATACGGTATATATCTCGGTATTTTCTACATTTTTCTATTTGGATTTAGAAAAAAAAAATCTGTATTTACTTTTTGAAAATCTTAATTTAACATCCTGCCTAATGTTGTCCTACAAACAGTGTTTATATTGAAAGCTATAAATACAAATATAGTGAATGTAACAATGTAGTCTGGCACACTAATAGGCCTACAGTATGTGTAAAAAAGATAAAGTTACTTTACATTCTAACATTGTAACATTACAATCTAAAGATAAAAATAATGCTTTTTAAAGCAGAAGTTGAATTCGCTAGACCAGTGGTTCCCAACCACAGTCCTGGAGGCCCTCCAACACTGCATGTTTTCCATGTCTCATTTATCAAACACACTTGATACAGATCATCAGCTCATTAGTAGAGACTCCAAAACCTGAAATGGGTGTGTCAGACAAAGGAGAGATTCAAAAGATGCAGTGTTGGGGGGCCTCCAGGAATGTGGTTGGGAACCACTGCACTAGACTAAAAATTAAAATAAAAACAAAAGCACAGACTAATTTGCTATATATATATATATATATATATATATATATATATATAGCTAAATAATAATTATCAAAATGTATATTTCAGTCAGAATTATGGCGATCCCATTCTATTGCGTTCCGTCTGTTTGGCGCGGATGCGCGCGGCGGCGCTCGTTCACGGAAGTCTATGAAGTTTAGAGGAGAATGAGATTCGCTATCACAAGGCTCGTCCAATCCTGACAGCAAAATGGAAATATTTGTATGACTTTCTGACATTTACAGATGGAGAATATACCTGTGAAATGTAAGTTATGCGCTTAGGAAAACACGACATCACAAAAGCATTAAACAGCGCAAATGTCAGCACATGAATCTGTCAGAGCATCTGACGGGGCAAGCCGCTTTAAACGATAGGCCTACGTGTTAACTATATCTTAATCTTACGAGTTATTTTTAAAGCCCTTAATATTAAGCATGTCTCATGTTTAAGCCAAATTGTAATATGCATTTCCCCCGCAGTAGCACTCTGCGACGTCCACCGCTGTTTTTCAGATGCTCTTGTTTAAAATCTATCGATATAAACGGTATCGCCTCATTCCGTATCGTATATTAAAAATATATCGGTATATCGCAAAAACTCGATATACCGCCCAGCCCTAATCTGGCCTAAACAAAAAGTGTTTTTATAAAAACAATATTTCAATATTAAAATATTTTAAACAATATTACTTCACTGCTTTTTAAAAAGAAATTATAATAAAAAATAATGGCATTCTACTTGTCAACATTTTTTTTAAGATTTATTTATTTATTTATTTGCAATCTCCCACAATTACAACATCTGGATATTTTTAATAGTAGGCCCCATTAAGCTACCAAAAATTAATAAATTTAAATTAGATCACACAAAAAATGAGCGTCACTGACCCGTATTGAACTGTCATTCTTACCGGCTCATTGCACAGCGCGCTGTCGTTGAAATAGTGTGACACGACGTAGTTCTTCGGAAACACTTGTGGCTGCAACACATAAAATGTCAAATTGTGCATCCTTTGATCTTTACTTTAAGTTGCACAGGCTTCTCACACGTTACCAAAACCGCAGAACAACAATGAGGTTAGTAGCCTACAAAATGACACGGGACAGATAAATGAGATTGCGAACTTTCTAATAGACAATGAGCAGTTTTTTAAAGGCAAAACTCACGAATCCGTTCGTTCTTTCAATGTTTATAGTGTCCTGCAGATTTCTGATCGTCGTCTTCATAAAATCATTGCACCCACTTCCTTGAACAGTCAATATTGATAGAAGTAACAGCACTGAAAGGCAAACAATATGGGTTCAGAGTATTAAAATCCGTAAGATATTTAAAACTACGCATTATGTACTCTTGGTATCGCAAACACCATACACACTGTCTGTCTGAAAATACAACCATTTTAATACGCGCATCAATTGATGGACCTTCGTCAGTGCTGCACGCGAATCACATTACCTGTTGGTGACATGCTTCTACCGGCCAATGTGGCCCATATTCCCCATGTTCTTCTTAACCAAGTCCTTGTGCACGACAGATTGTTGCAGAAAAGTTGTGTAAGAATCTCAGTCTCAGTGGGTTCCCCAGCTGCCTCTTTTAGTGACTACTAACCAACGTCTCCTCTTCCTCTTACTGCTGCACTTTCTCCTCGATCCCTCATTGACAGCTGCTCTCCGTTCTGTCCCTCTTCTGGCTCAATCCCACAGTCAGTCACTTGGAAATTCCCAGTCTCTCTTGGGAGCCAAATTCTGATTGATAGCAAAATATTCCTCTATTTCCTGTGATATAATAGTTTCCTGTTTCGTTTGCTCCGCTTACTTTCCTTCTTTCTTTATAAATCCCTTTGTTTTGAGGCTTTTATTTTCAGTTGGCAAGCTAGTGAGCAGCACGTTTGATCTGTTGTAGGCTGTTTGCTCACTGAAAGTGAAAGTCCTGGTGGTTCAATCTCTCTCCCCGCTCTCTTTAAAGCTCCCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110589 lncRNA downstream 584 5882678 ~ 5887097 (-) False G97185
TU110595 lncRNA downstream 1544 5881377 ~ 5886137 (-) False G97185
TU110592 lncRNA downstream 1544 5882942 ~ 5886137 (-) True G97185
TU110692 lncRNA downstream 52770 5834570 ~ 5834911 (-) True G97255
TU110689 lncRNA downstream 110013 5777404 ~ 5777668 (-) True G97252
TU110618 lncRNA upstream 1344 5894654 ~ 5908304 (-) True G97191
TU110723 lncRNA upstream 59648 5952958 ~ 5959473 (-) True G97282
TU110623 lncRNA upstream 67031 5960341 ~ 5964341 (-) True G97193
TU110638 lncRNA upstream 90759 5984069 ~ 5984824 (-) True G97201
TU110748 lncRNA upstream 186964 6080274 ~ 6080496 (-) True G97303
CI01000016_05871353_05874812.mRNA mRNA downstream 12869 5871184 ~ 5874812 (-) True CI01000016_05871353_05874812
CI01000016_05843077_05863364.mRNA mRNA downstream 24317 5842120 ~ 5863364 (-) True CI01000016_05843077_05863364
CI01000016_05824628_05826424.mRNA mRNA downstream 61257 5823123 ~ 5826424 (-) True CI01000016_05824628_05826424
CI01000016_05804456_05811231.mRNA mRNA downstream 76450 5803128 ~ 5811231 (-) True CI01000016_05804456_05811231
CI01000016_05793987_05797545.mRNA mRNA downstream 90136 5793973 ~ 5797545 (-) True CI01000016_05793987_05797545
CI01000016_05910340_05911197.mRNA mRNA upstream 16942 5910252 ~ 5912172 (-) True CI01000016_05910340_05911197
CI01000016_05930860_05934507.mRNA mRNA upstream 37543 5930853 ~ 5934507 (-) True CI01000016_05930860_05934507
CI01000016_05945614_05946695.mRNA mRNA upstream 52249 5945559 ~ 5948309 (-) True CI01000016_05945614_05946695
CI01000016_05986400_05994821.mRNA mRNA upstream 93090 5986400 ~ 5994821 (-) True CI01000016_05986400_05994821
CI01000016_06018338_06023791.mRNA mRNA upstream 125020 6018330 ~ 6023791 (-) True CI01000016_06018338_06023791
TU110396 other downstream 469464 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 556835 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 964277 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 1956630 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 2222368 3635607 ~ 3665313 (-) True G96628
TU110786 other upstream 265676 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 2995523 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 3043479 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 3341686 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 3362792 9256102 ~ 9257611 (-) True G98691

Expression Profile