RNA id: TU109274


Basic Information

Item Value
RNA id TU109274
length 203
lncRNA type intronic
GC content 0.41
exon number 2
gene id G96076
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5922761 ~ 5922984 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCGGTAAGTTGTACTGTATTTTAACATACCTTCAGATGTTTAGTCATGTTTAGTTCGCGCTGTAACTGGTATTAAAGCGGAGAAGATGTTCACATGCGCTCCGTGCTGCCGCTTCTCTTTAACTGAGGCGCTAAAGCGATCTGTCACGTCACATTAAACAGCGCCAAAAACATAATAAGATGGACGTCATTTGAAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109256 lncRNA upstream 146451 5776060 ~ 5776310 (+) True G96058
TU109232 lncRNA upstream 166383 5756097 ~ 5756378 (+) True G96048
TU109231 lncRNA upstream 166867 5755638 ~ 5755894 (+) True G96047
TU109217 lncRNA upstream 190298 5732257 ~ 5732463 (+) True G96035
TU109216 lncRNA upstream 195686 5726845 ~ 5727075 (+) True G96034
TU109134 lncRNA downstream 1193 5965086 ~ 5965357 (+) True CI01000016_05966893_05982233
TU109277 lncRNA downstream 7408 5930392 ~ 5934791 (+) True G96079
TU109149 lncRNA downstream 61081 5984065 ~ 5984824 (+) True G95967
TU109285 lncRNA downstream 73514 5996498 ~ 5996720 (+) True G96087
TU109290 lncRNA downstream 153394 6076378 ~ 6078295 (+) True G96092
CI01000016_05914765_05917918.mRNA mRNA upstream 4709 5914067 ~ 5918052 (+) True CI01000016_05914765_05917918
CI01000016_05894658_05908090.mRNA mRNA upstream 14222 5894658 ~ 5908539 (+) True CI01000016_05894658_05908090
CI01000016_05891870_05892528.mRNA mRNA upstream 30082 5891870 ~ 5892679 (+) True CI01000016_05891870_05892528
CI01000016_05878037_05885761.mRNA mRNA upstream 36569 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
CI01000016_05837368_05837667.mRNA mRNA upstream 84834 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05942798_05943229.mRNA mRNA downstream 19814 5942798 ~ 5943450 (+) True CI01000016_05942798_05943229
CI01000016_05956820_05958904.mRNA mRNA downstream 33599 5956583 ~ 5958917 (+) True CI01000016_05956820_05958904
CI01000016_05960829_05963788.mRNA mRNA downstream 37845 5960829 ~ 5963788 (+) True CI01000016_05960829_05963788
CI01000016_05966893_05982233.mRNA mRNA downstream 41231 5964215 ~ 5982645 (+) False CI01000016_05966893_05982233
CI01000016_06030950_06038330.mRNA mRNA downstream 107966 6030950 ~ 6038330 (+) True CI01000016_06030950_06038330
TU109033 other upstream 514898 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 514898 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 696820 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 1086106 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1648856 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1237657 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 1861081 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2091379 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3073114 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 3872647 9795631 ~ 9795684 (+) True G99016

Expression Profile