Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU109149 |
| length | 760 |
| lncRNA type | inter_gene |
| GC content | 0.32 |
| exon number | 1 |
| gene id | G95967 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 5984065 ~ 5984824 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU109134 | lncRNA | upstream | 18708 | 5965086 ~ 5965357 (+) | True | CI01000016_05966893_05982233 |
| TU109277 | lncRNA | upstream | 49274 | 5930392 ~ 5934791 (+) | True | G96079 |
| TU109274 | lncRNA | upstream | 61081 | 5922761 ~ 5922984 (+) | True | G96076 |
| TU109256 | lncRNA | upstream | 207755 | 5776060 ~ 5776310 (+) | True | G96058 |
| TU109232 | lncRNA | upstream | 227687 | 5756097 ~ 5756378 (+) | True | G96048 |
| TU109285 | lncRNA | downstream | 11674 | 5996498 ~ 5996720 (+) | True | G96087 |
| TU109290 | lncRNA | downstream | 91554 | 6076378 ~ 6078295 (+) | True | G96092 |
| TU109293 | lncRNA | downstream | 95928 | 6080752 ~ 6081244 (+) | True | G96095 |
| TU109294 | lncRNA | downstream | 96511 | 6081335 ~ 6118470 (+) | True | G96096 |
| TU109126 | lncRNA | downstream | 228154 | 6212978 ~ 6213633 (+) | True | G95949 |
| CI01000016_05966893_05982233.mRNA | mRNA | upstream | 1420 | 5964215 ~ 5982645 (+) | False | CI01000016_05966893_05982233 |
| CI01000016_05960829_05963788.mRNA | mRNA | upstream | 20277 | 5960829 ~ 5963788 (+) | True | CI01000016_05960829_05963788 |
| CI01000016_05956820_05958904.mRNA | mRNA | upstream | 25148 | 5956583 ~ 5958917 (+) | True | CI01000016_05956820_05958904 |
| CI01000016_05942798_05943229.mRNA | mRNA | upstream | 40615 | 5942798 ~ 5943450 (+) | True | CI01000016_05942798_05943229 |
| CI01000016_05921722_05928898.mRNA | mRNA | upstream | 54337 | 5921193 ~ 5929728 (+) | False | CI01000016_05921722_05928898 |
| CI01000016_06030950_06038330.mRNA | mRNA | downstream | 46126 | 6030950 ~ 6038330 (+) | True | CI01000016_06030950_06038330 |
| CI01000016_06038939_06045122.mRNA | mRNA | downstream | 54115 | 6038939 ~ 6045402 (+) | True | CI01000016_06038939_06045122 |
| CI01000016_06058748_06068258.mRNA | mRNA | downstream | 73924 | 6058748 ~ 6068648 (+) | True | CI01000016_06058748_06068258 |
| CI01000016_06158996_06159538.mRNA | mRNA | downstream | 173898 | 6158722 ~ 6159725 (+) | True | CI01000016_06158996_06159538 |
| CI01000016_06174800_06210259.mRNA | mRNA | downstream | 189976 | 6174800 ~ 6211031 (+) | True | CI01000016_06174800_06210259 |
| TU109033 | other | upstream | 576202 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
| TU109031 | other | upstream | 576202 | 5406748 ~ 5406829 (+) | True | G95870 |
| TU108946 | other | upstream | 758124 | 5219880 ~ 5225941 (+) | True | G95792 |
| TU108629 | other | upstream | 1147410 | 4834558 ~ 4836655 (+) | True | G95503 |
| TU108786 | other | upstream | 1710160 | 4272636 ~ 4273905 (+) | True | G95648 |
| TU109637 | other | downstream | 1175817 | 7160641 ~ 7161290 (+) | True | G96389 |
| TU111256 | other | downstream | 1799241 | 7785226 ~ 7785723 (+) | True | G97766 |
| TU111320 | other | downstream | 2029539 | 8014363 ~ 8015775 (+) | True | G97824 |
| TU111822 | other | downstream | 3011274 | 8996098 ~ 9002717 (+) | True | G98288 |
| TU112665 | other | downstream | 3810807 | 9795631 ~ 9795684 (+) | True | G99016 |
