RNA id: TU109290


Basic Information

Item Value
RNA id TU109290
length 314
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id G96092
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6076378 ~ 6078295 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGAACTCAAATTCCAACATGAATTTCACCTTCGACTGAGAGCGGAACACTGGGTAACTGACATTACAGGAGTGACTGTTTGAGCTTAGAGCCGTGCATTCAATCTTAAACTGGGTGTCTTCCCGTATACTCAGGCTGCTGAAATGCAGGTTTTTGGAGTAATGAAGAGTGAGACTAGTGTTATAAGCATTTTCCAGTTGGTTTTGTAGCTGTACTTCTACTGCAAGCCGACGCCGAGGACTGCGTAAAACATAAGGTTGTTGCCTTGTTCCAGAAATGTCCATATGGGCCTGTAAAACCAGATCAGTTACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109285 lncRNA upstream 79658 5996498 ~ 5996720 (+) True G96087
TU109149 lncRNA upstream 91554 5984065 ~ 5984824 (+) True G95967
TU109134 lncRNA upstream 111021 5965086 ~ 5965357 (+) True CI01000016_05966893_05982233
TU109277 lncRNA upstream 141587 5930392 ~ 5934791 (+) True G96079
TU109274 lncRNA upstream 153394 5922761 ~ 5922984 (+) True G96076
TU109293 lncRNA downstream 2457 6080752 ~ 6081244 (+) True G96095
TU109294 lncRNA downstream 3040 6081335 ~ 6118470 (+) True G96096
TU109126 lncRNA downstream 134683 6212978 ~ 6213633 (+) True G95949
TU109193 lncRNA downstream 161541 6239836 ~ 6247237 (+) True G96011
TU109156 lncRNA downstream 297805 6376100 ~ 6376980 (+) True G95974
CI01000016_06058748_06068258.mRNA mRNA upstream 7730 6058748 ~ 6068648 (+) True CI01000016_06058748_06068258
CI01000016_06038939_06045122.mRNA mRNA upstream 30976 6038939 ~ 6045402 (+) True CI01000016_06038939_06045122
CI01000016_06030950_06038330.mRNA mRNA upstream 38048 6030950 ~ 6038330 (+) True CI01000016_06030950_06038330
CI01000016_05966893_05982233.mRNA mRNA upstream 93733 5964215 ~ 5982645 (+) False CI01000016_05966893_05982233
CI01000016_05960829_05963788.mRNA mRNA upstream 112590 5960829 ~ 5963788 (+) True CI01000016_05960829_05963788
CI01000016_06158996_06159538.mRNA mRNA downstream 80427 6158722 ~ 6159725 (+) True CI01000016_06158996_06159538
CI01000016_06174800_06210259.mRNA mRNA downstream 96505 6174800 ~ 6211031 (+) True CI01000016_06174800_06210259
CI01000016_06270425_06375483.mRNA mRNA downstream 192130 6270425 ~ 6375483 (+) True CI01000016_06270425_06375483
CI01000016_06398455_06420062.mRNA mRNA downstream 320160 6398455 ~ 6420138 (+) True CI01000016_06398455_06420062
CI01000016_06684506_06687365.mRNA mRNA downstream 606211 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
TU109033 other upstream 668515 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 668515 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 850437 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 1239723 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1802473 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1082346 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 1705770 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1936068 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2917803 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 3717336 9795631 ~ 9795684 (+) True G99016

Expression Profile