RNA id: TU109294


Basic Information

Item Value
RNA id TU109294
length 1971
lncRNA type antisense_over
GC content 0.47
exon number 14
gene id G96096
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6081335 ~ 6118470 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAAAATATGAGCCAATCTGTTCTCCATTTAAGGCCTGTGTGATTATGACATCTCCTTCAGGGGTGAGGTCAAACAAGATGACCTTTCCTTTGTGCTTGAATCTGGGCGCACCAGCAACATACAACCTCCTCCAGTCACCAACAACCACCGATGACACTGTGTAACCTAGGTAGGCTGCATGGTTCTTCAGCTCCAGAGGGAACTCTTTCTCGAAGGCCTCTCGTGAGGGAATAAGCTGCCCTTCTTTGCTCTCCTTCAGGACACCTCCCTCCCAGTCATATGCTCCCACCATGCCAAACAAGATTCCATCATCCAAAATGTGTGTCGAAAAACCAATCTGAGACATCTCCATGAGAAAGGCACTTTCATTGTATCCCAGGGTCCCCTCTAGACTAAAAATGCGATCTCCCAAAGCATCTACAATGTCATTTAGAGCAGCTTCATCCGTCACATTGAAGAAGTATTTCTCATCTGGGTCACTGGCAATGTACTTAATCTCATTGATAAAGGTCTCTGGATCCTGCTGTCTGCGGATGTAGTGACCTAATACAGCGATGGCATATCTTGTGATGTTACGTTTTTCACATTCAGCCAGGGACTCAGGAAGGTCTTCCCCATCATGGGACTCTCCATCTGTCACGACTATCATCACTTTAGTGGCTCCTTCCCTTGCTCCTCTGTCTGGACTAAAGGCTTCCGTGCAGGCCATTTGGATGGCGTACGCAGTGCGGGTCTCCCGTCCCTCCTGACGACTGATGTTCTTGGCGGCTTCAACCACATCCTGTGTTGTCTGATAGTCCCTGAGAGACCACTCGTGTACTGAGATCTCCCCGTACTGCAGGACACCAACCTGCATTTGCTCAGGGCTTATGTGGAACTTGCTGAGAATGTTGCTAAGGAAGTTCTGCACCTCGTACCAGGGGTAGATACTATTAGAACCATCTAAAACAATCACTATGTCCATGTATGTCGTGCACCTCCGGGCAGTAGGCGCAATGATGTCCTTGGGCTCCATGTCATTGGTGACAGACGCACAAATTCCTGTGCTAAACAGAGATGTACCACATTCCTGGGACCACAGTGGAGCGCAGGCCAGGAAGCCATCTGAAGCAGCAGGGGTCAGCGTCATCCCCAAATGAGAGTTTTTAAAATTTCGAGACACGTTCTGAAATGCATTTTCACCTAGGTTAACTTTTGAGCAATTAGAATTGATCTCATCTTCCACAATGCACTTGTAAATATCTCCCTTCCTGTTATTTTGTGGTCCATCCCATGGAGCACCAACCAGAATTGATTTTTCTCCATTGTCCTCGTGCTGTAGCACAGAGAAGCCGAACAGAGCATTTTCAGGTCCACTGAAGATCCGTGGCCTCTTCACATCAATATTAAAACACTCACACAGCCCTTTGAGAAGAACAGTGATCTTTAACAACAGCAGGTACTTGTGGATCTCCATTTGCCAGTTATGTGATTCAGTCTCTTTTTCTCCTTCTTCAATTTGGAAATGTCAGCAGTGATTGTAAATACAGCTCGCGCACGTAATCAGGGGTGCACGCGCGTGTTCTCTCAGGTGGAGATGTGCTTCCTCTCCAGTGGCATACTGTAACTCACGCGCTCATAGTGCAGTACTGTGGCACGCGCGCCGCTCTCACATTCCCGTCTTGTTCCTCACATAAACAACGATTAGGCCTATTCAAATTCCAGGTTTGCGCGGCTCCGACACCTGCTGCCGTTAAATAAGCGCGCGCACGAGTTTAGTCCAGCTCTTGCAAACGAGCGGTTCCCAAAATAAATACATTCACAAAAACAACTGACAAAAAGATTATATCCATGAATTTTCTCTCAATGTTGTTAAAAAAGACTTTATCCTTTACGTATGAAATGTGGAAATTATCATAAATATTCTTTTCCTGAGGTGAAATTTATTTAAATGCCTTCGTAGCTGCTTTCCCTCGACCGCAACGTGTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109293 lncRNA upstream 91 6080752 ~ 6081244 (+) True G96095
TU109290 lncRNA upstream 3040 6076378 ~ 6078295 (+) True G96092
TU109285 lncRNA upstream 84615 5996498 ~ 5996720 (+) True G96087
TU109149 lncRNA upstream 96511 5984065 ~ 5984824 (+) True G95967
TU109134 lncRNA upstream 115978 5965086 ~ 5965357 (+) True CI01000016_05966893_05982233
TU109126 lncRNA downstream 94508 6212978 ~ 6213633 (+) True G95949
TU109193 lncRNA downstream 121366 6239836 ~ 6247237 (+) True G96011
TU109156 lncRNA downstream 257630 6376100 ~ 6376980 (+) True G95974
TU109366 lncRNA downstream 366107 6484577 ~ 6484776 (+) True G96163
TU109442 lncRNA downstream 572720 6691190 ~ 6691843 (+) True G96236
CI01000016_06058748_06068258.mRNA mRNA upstream 12687 6058748 ~ 6068648 (+) True CI01000016_06058748_06068258
CI01000016_06038939_06045122.mRNA mRNA upstream 35933 6038939 ~ 6045402 (+) True CI01000016_06038939_06045122
CI01000016_06030950_06038330.mRNA mRNA upstream 43005 6030950 ~ 6038330 (+) True CI01000016_06030950_06038330
CI01000016_05966893_05982233.mRNA mRNA upstream 98690 5964215 ~ 5982645 (+) False CI01000016_05966893_05982233
CI01000016_05960829_05963788.mRNA mRNA upstream 117547 5960829 ~ 5963788 (+) True CI01000016_05960829_05963788
CI01000016_06158996_06159538.mRNA mRNA downstream 40252 6158722 ~ 6159725 (+) True CI01000016_06158996_06159538
CI01000016_06174800_06210259.mRNA mRNA downstream 56330 6174800 ~ 6211031 (+) True CI01000016_06174800_06210259
CI01000016_06270425_06375483.mRNA mRNA downstream 151955 6270425 ~ 6375483 (+) True CI01000016_06270425_06375483
CI01000016_06398455_06420062.mRNA mRNA downstream 279985 6398455 ~ 6420138 (+) True CI01000016_06398455_06420062
CI01000016_06684506_06687365.mRNA mRNA downstream 566036 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
TU109033 other upstream 673472 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 673472 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 855394 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 1244680 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1807430 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1042171 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 1665595 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1895893 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2877628 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 3677161 9795631 ~ 9795684 (+) True G99016

Expression Profile