RNA id: TU110778


Basic Information

Item Value
RNA id TU110778
length 307
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G97333
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6142747 ~ 6143053 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTCAACTGCCTGTTTTATTGGCATTAGCGACCAAATTTGTTTTAGCATTTGCTAAGGTCCTTGATCCAACAACTCTTTACCATATTTACTGTAGGTTATTGAACAGCACTGTTTGTTATTTCTGCATTGTTCTAATATGAAAATGGCCTTTCAATCTGGGACTTTCAACCTCCAGACTAAAACCAACAGGGAAAAATAAACAAGAAACAAATGCTTTGGCACAGAAAGCAGCTAACATGGATGTCTGGTGGGTAAGGAACGAGCCTTTTCATTTCAAGTGCCAGTTTTAACGCACACACTTACCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110755 lncRNA downstream 47512 6094880 ~ 6095235 (-) True G97310
TU110748 lncRNA downstream 62251 6080274 ~ 6080496 (-) True G97303
TU110638 lncRNA downstream 157923 5984069 ~ 5984824 (-) True G97201
TU110623 lncRNA downstream 178406 5960341 ~ 5964341 (-) True G97193
TU110723 lncRNA downstream 183274 5952958 ~ 5959473 (-) True G97282
TU110780 lncRNA upstream 8388 6151441 ~ 6151680 (-) True G97335
TU110661 lncRNA upstream 69499 6212552 ~ 6212818 (-) True G97224
TU110599 lncRNA upstream 69942 6212995 ~ 6213650 (-) False G97187
TU110600 lncRNA upstream 69981 6213034 ~ 6213650 (-) True G97187
TU110674 lncRNA upstream 70859 6213912 ~ 6214493 (-) True G97237
CI01000016_06138000_06138287.mRNA mRNA downstream 4322 6137607 ~ 6138425 (-) True CI01000016_06138000_06138287
CI01000016_06131958_06135495.mRNA mRNA downstream 7252 6130778 ~ 6135495 (-) True CI01000016_06131958_06135495
CI01000016_06069691_06109173.mRNA mRNA downstream 33574 6069290 ~ 6109173 (-) True CI01000016_06069691_06109173
CI01000016_06048748_06054049.mRNA mRNA downstream 88698 6048740 ~ 6054049 (-) True CI01000016_06048748_06054049
CI01000016_06018338_06023791.mRNA mRNA downstream 118956 6018330 ~ 6023791 (-) True CI01000016_06018338_06023791
CI01000016_06146332_06147633.mRNA mRNA upstream 3170 6146223 ~ 6147667 (-) True CI01000016_06146332_06147633
CI01000016_06147867_06148327.mRNA mRNA upstream 4655 6147708 ~ 6148348 (-) True CI01000016_06147867_06148327
CI01000016_06162256_06162804.mRNA mRNA upstream 19101 6162154 ~ 6163022 (-) True CI01000016_06162256_06162804
CI01000016_06168667_06173080.mRNA mRNA upstream 25614 6168667 ~ 6173080 (-) True CI01000016_06168667_06173080
CI01000016_06253158_06263923.mRNA mRNA upstream 109778 6252831 ~ 6264056 (-) True CI01000016_06253158_06263923
TU110396 other downstream 724530 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 811901 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 1219343 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 2211696 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 2477434 3635607 ~ 3665313 (-) True G96628
TU110786 other upstream 15933 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 2745780 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 2793736 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 3091943 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 3113049 9256102 ~ 9257611 (-) True G98691

Expression Profile