RNA id: TU110674


Basic Information

Item Value
RNA id TU110674
length 582
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G97237
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6213912 ~ 6214493 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAATATACTAAAACAGAAGAGTGCTTTAATAGGAATTGGAATGATGTTTTGTCTCAGGAAGAATCATGTAGGTAGGAAATAACAAATGTGGAACATTTATAACCTGTTTTTAACAAAGAAGATTACTCAGAAGGTCATTTTTTAAAAAAAGGAATGACATATTTACATTGTGCTGGCTGCTGACGATCAATATTTTAACTTTTAATACCACAGAACGAGAAGCGAATGTGTCGTATTAGACGAGGGATAGAGTAACACTGCCCTCTAGCGATACGACATAGAACTGGACAAGCAATTTTGGGTCTACTGTTACTCAAAACCTTGAAGCTAAAAGAATTATGAGACCCCCCCCAAAAATATAGATCTAAAAAATCTAACAGCAACTTAATTTTAAAAAGTTATAGGCTATTTATAACGTTCGGAGCTCGAATGTTAATAAAATGCGCAAAACCTCTTTAACCAACAGGTGGCACTAGCAAACTAGCTAATTCAGGTCAACAGCATTACGTCATCCCTTTACACAAAGTGAATGTGGTTATTGTCTCTGGTAATGAACATGTGGTTAATACAGTTCGATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110599 lncRNA downstream 262 6212995 ~ 6213650 (-) False G97187
TU110600 lncRNA downstream 262 6213034 ~ 6213650 (-) True G97187
TU110661 lncRNA downstream 1094 6212552 ~ 6212818 (-) True G97224
TU110780 lncRNA downstream 62232 6151441 ~ 6151680 (-) True G97335
TU110778 lncRNA downstream 70859 6142747 ~ 6143053 (-) True G97333
TU110804 lncRNA upstream 3533 6218026 ~ 6218316 (-) True G97357
TU110809 lncRNA upstream 4734 6219227 ~ 6220930 (-) True G97358
TU110816 lncRNA upstream 19832 6234325 ~ 6270577 (-) False G97364
TU110817 lncRNA upstream 19832 6234325 ~ 6234808 (-) True G97364
TU110828 lncRNA upstream 25359 6239852 ~ 6240219 (-) True G97370
CI01000016_06168667_06173080.mRNA mRNA downstream 40832 6168667 ~ 6173080 (-) True CI01000016_06168667_06173080
CI01000016_06162256_06162804.mRNA mRNA downstream 50890 6162154 ~ 6163022 (-) True CI01000016_06162256_06162804
CI01000016_06147867_06148327.mRNA mRNA downstream 65564 6147708 ~ 6148348 (-) True CI01000016_06147867_06148327
CI01000016_06146332_06147633.mRNA mRNA downstream 66245 6146223 ~ 6147667 (-) True CI01000016_06146332_06147633
CI01000016_06138000_06138287.mRNA mRNA downstream 75487 6137607 ~ 6138425 (-) True CI01000016_06138000_06138287
CI01000016_06253158_06263923.mRNA mRNA upstream 38338 6252831 ~ 6264056 (-) True CI01000016_06253158_06263923
CI01000016_06387119_06398090.mRNA mRNA upstream 172089 6386582 ~ 6398090 (-) True CI01000016_06387119_06398090
CI01000016_06424554_06462224.mRNA mRNA upstream 209622 6424115 ~ 6462618 (-) True CI01000016_06424554_06462224
CI01000016_06508677_06514489.mRNA mRNA upstream 293644 6508137 ~ 6514489 (-) True CI01000016_06508677_06514489
CI01000016_06649431_06675045.mRNA mRNA upstream 433963 6648456 ~ 6677265 (-) True CI01000016_06649431_06675045
TU110786 other downstream 54191 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 795695 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 883066 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 1290508 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 2282861 3865761 ~ 3890326 (-) True G96690
TU112287 other upstream 2674340 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 2722296 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 3020503 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 3041609 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 3295129 9511357 ~ 9511415 (-) False G98896

Expression Profile