Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU109156 |
| length | 881 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G95974 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 6376100 ~ 6376980 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU109193 | lncRNA | upstream | 128863 | 6239836 ~ 6247237 (+) | True | G96011 |
| TU109126 | lncRNA | upstream | 162467 | 6212978 ~ 6213633 (+) | True | G95949 |
| TU109294 | lncRNA | upstream | 257630 | 6081335 ~ 6118470 (+) | True | G96096 |
| TU109293 | lncRNA | upstream | 294856 | 6080752 ~ 6081244 (+) | True | G96095 |
| TU109290 | lncRNA | upstream | 297805 | 6076378 ~ 6078295 (+) | True | G96092 |
| TU109366 | lncRNA | downstream | 107597 | 6484577 ~ 6484776 (+) | True | G96163 |
| TU109442 | lncRNA | downstream | 314210 | 6691190 ~ 6691843 (+) | True | G96236 |
| TU109174 | lncRNA | downstream | 350147 | 6727127 ~ 6727496 (+) | True | G95992 |
| TU109463 | lncRNA | downstream | 429741 | 6806721 ~ 6807026 (+) | True | G96257 |
| TU109144 | lncRNA | downstream | 432827 | 6815647 ~ 6816180 (+) | True | G95962 |
| CI01000016_06270425_06375483.mRNA | mRNA | upstream | 617 | 6270425 ~ 6375483 (+) | True | CI01000016_06270425_06375483 |
| CI01000016_06174800_06210259.mRNA | mRNA | upstream | 165069 | 6174800 ~ 6211031 (+) | True | CI01000016_06174800_06210259 |
| CI01000016_06158996_06159538.mRNA | mRNA | upstream | 216375 | 6158722 ~ 6159725 (+) | True | CI01000016_06158996_06159538 |
| CI01000016_06058748_06068258.mRNA | mRNA | upstream | 307452 | 6058748 ~ 6068648 (+) | True | CI01000016_06058748_06068258 |
| CI01000016_06038939_06045122.mRNA | mRNA | upstream | 330698 | 6038939 ~ 6045402 (+) | True | CI01000016_06038939_06045122 |
| CI01000016_06398455_06420062.mRNA | mRNA | downstream | 21475 | 6398455 ~ 6420138 (+) | True | CI01000016_06398455_06420062 |
| CI01000016_06684506_06687365.mRNA | mRNA | downstream | 307526 | 6684506 ~ 6687405 (+) | True | CI01000016_06684506_06687365 |
| CI01000016_06756366_06782229.mRNA | mRNA | downstream | 379386 | 6756366 ~ 6782619 (+) | True | CI01000016_06756366_06782229 |
| CI01000016_06813604_06813789.mRNA | mRNA | downstream | 436624 | 6813604 ~ 6813937 (+) | False | CI01000016_06813604_06813789 |
| CI01000016_06890651_06904100.mRNA | mRNA | downstream | 513166 | 6890146 ~ 6904634 (+) | True | CI01000016_06890651_06904100 |
| TU109033 | other | upstream | 968237 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
| TU109031 | other | upstream | 968237 | 5406748 ~ 5406829 (+) | True | G95870 |
| TU108946 | other | upstream | 1150159 | 5219880 ~ 5225941 (+) | True | G95792 |
| TU108629 | other | upstream | 1539445 | 4834558 ~ 4836655 (+) | True | G95503 |
| TU108786 | other | upstream | 2102195 | 4272636 ~ 4273905 (+) | True | G95648 |
| TU109637 | other | downstream | 783661 | 7160641 ~ 7161290 (+) | True | G96389 |
| TU111256 | other | downstream | 1407085 | 7785226 ~ 7785723 (+) | True | G97766 |
| TU111320 | other | downstream | 1637383 | 8014363 ~ 8015775 (+) | True | G97824 |
| TU111822 | other | downstream | 2619118 | 8996098 ~ 9002717 (+) | True | G98288 |
| TU112665 | other | downstream | 3418651 | 9795631 ~ 9795684 (+) | True | G99016 |
