RNA id: TU109366


Basic Information

Item Value
RNA id TU109366
length 200
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G96163
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6484577 ~ 6484776 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTCTCATCTGGACGGACCATCGGAATCTCACTTACATCCAGGACGCTAAGAGGTTAAACTCACGACAAGCCTGTTGGGCCCTCTTTTTTAACCGATTCAATTTCATCCACTCTTATCGCCCAGGTTCGAAAAATCTCAAGCCAGATACACTCTTAAGGCAGTCTGAACCACCTGAGAAGGAGTCTTGTCCAGAAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109156 lncRNA upstream 107597 6376100 ~ 6376980 (+) True G95974
TU109193 lncRNA upstream 237340 6239836 ~ 6247237 (+) True G96011
TU109126 lncRNA upstream 270944 6212978 ~ 6213633 (+) True G95949
TU109294 lncRNA upstream 366107 6081335 ~ 6118470 (+) True G96096
TU109293 lncRNA upstream 403333 6080752 ~ 6081244 (+) True G96095
TU109442 lncRNA downstream 206414 6691190 ~ 6691843 (+) True G96236
TU109174 lncRNA downstream 242351 6727127 ~ 6727496 (+) True G95992
TU109463 lncRNA downstream 321945 6806721 ~ 6807026 (+) True G96257
TU109144 lncRNA downstream 325031 6815647 ~ 6816180 (+) True G95962
TU109525 lncRNA downstream 438583 6923359 ~ 6924302 (+) True G96299
CI01000016_06398455_06420062.mRNA mRNA upstream 64439 6398455 ~ 6420138 (+) True CI01000016_06398455_06420062
CI01000016_06270425_06375483.mRNA mRNA upstream 109094 6270425 ~ 6375483 (+) True CI01000016_06270425_06375483
CI01000016_06174800_06210259.mRNA mRNA upstream 273546 6174800 ~ 6211031 (+) True CI01000016_06174800_06210259
CI01000016_06158996_06159538.mRNA mRNA upstream 324852 6158722 ~ 6159725 (+) True CI01000016_06158996_06159538
CI01000016_06058748_06068258.mRNA mRNA upstream 415929 6058748 ~ 6068648 (+) True CI01000016_06058748_06068258
CI01000016_06684506_06687365.mRNA mRNA downstream 199730 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
CI01000016_06756366_06782229.mRNA mRNA downstream 271590 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_06813604_06813789.mRNA mRNA downstream 328828 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06890651_06904100.mRNA mRNA downstream 405370 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06954301_06958598.mRNA mRNA downstream 469525 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
TU109033 other upstream 1076714 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1076714 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1258636 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 1647922 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 2210672 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 675865 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 1299289 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1529587 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2511322 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 3310855 9795631 ~ 9795684 (+) True G99016

Expression Profile