RNA id: TU109174


Basic Information

Item Value
RNA id TU109174
length 370
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G95992
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6727127 ~ 6727496 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGACAGGTGATGAGCAGTGCCTGGTTTTCTCCACACATACCGCTTAGAATTAAGGCCAAAAAGTTCTATCTTGGTCTCATCAGACCAGAGAATCTTATTTCTCACCATCTTGGAGTCCTTCATGCGGGCTTTCATGTGTCTTGCACTGAGGAGAGGCTTCCGTCGGGCCACTCTACCATAAAGCCCCGACTGGTGGAGGGCTGCAGTGATGGTTGACTTTCTACAACTTTCTCCCATCTCCCGACTGCATCTCTGGAGCTCAGCCACAGTGATCTTTGGGTTCTTCTTTACCTCTCTCACCAAGGCTCTTCTCCCCCGATAGTTCAGTTTGGCCAGACGGCCAGCTCTAGGAAGGGTTCTGGTCGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109442 lncRNA upstream 35284 6691190 ~ 6691843 (+) True G96236
TU109366 lncRNA upstream 242351 6484577 ~ 6484776 (+) True G96163
TU109156 lncRNA upstream 350147 6376100 ~ 6376980 (+) True G95974
TU109193 lncRNA upstream 479890 6239836 ~ 6247237 (+) True G96011
TU109126 lncRNA upstream 513494 6212978 ~ 6213633 (+) True G95949
TU109463 lncRNA downstream 79225 6806721 ~ 6807026 (+) True G96257
TU109144 lncRNA downstream 82311 6815647 ~ 6816180 (+) True G95962
TU109525 lncRNA downstream 195863 6923359 ~ 6924302 (+) True G96299
TU109531 lncRNA downstream 202910 6930406 ~ 6935195 (+) True G96305
TU109540 lncRNA downstream 208192 6935688 ~ 6936001 (+) True G96308
CI01000016_06684506_06687365.mRNA mRNA upstream 39722 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
CI01000016_06398455_06420062.mRNA mRNA upstream 306989 6398455 ~ 6420138 (+) True CI01000016_06398455_06420062
CI01000016_06270425_06375483.mRNA mRNA upstream 351644 6270425 ~ 6375483 (+) True CI01000016_06270425_06375483
CI01000016_06174800_06210259.mRNA mRNA upstream 516096 6174800 ~ 6211031 (+) True CI01000016_06174800_06210259
CI01000016_06158996_06159538.mRNA mRNA upstream 567402 6158722 ~ 6159725 (+) True CI01000016_06158996_06159538
CI01000016_06756366_06782229.mRNA mRNA downstream 28870 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_06813604_06813789.mRNA mRNA downstream 86108 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06890651_06904100.mRNA mRNA downstream 162650 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06954301_06958598.mRNA mRNA downstream 226805 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
CI01000016_07178060_07180135.mRNA mRNA downstream 450564 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
TU109033 other upstream 1319264 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1319264 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1501186 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 1890472 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 2453222 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 433145 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 1056569 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1286867 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2268602 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 3068135 9795631 ~ 9795684 (+) True G99016

Expression Profile