RNA id: TU109463


Basic Information

Item Value
RNA id TU109463
length 306
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G96257
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6806721 ~ 6807026 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCACATCAACTTTATTTAGGCTTCATCTTTTACATTTCTGAACTTCAATACAGATTTACCAGCATATTAATTTCATCAGTTAACAAAATACAATTAAAGTAATACCACTAAAATCACATTAACACATAGTGCCAGTGGAAAGTAAATGTTGGAAATATAAGAATAAAAGTTTGAAGAGATAAAGTACTTAATTAGTAGCAGTATACAACAATAACCAGCGAATACATATAATCTTAAATCTTAAAACCACATGCTATAAAGAAAAGGGTCTTCTTTATTGCGACGACTCTTCCCCCCTGTCTCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109174 lncRNA upstream 79225 6727127 ~ 6727496 (+) True G95992
TU109442 lncRNA upstream 114878 6691190 ~ 6691843 (+) True G96236
TU109366 lncRNA upstream 321945 6484577 ~ 6484776 (+) True G96163
TU109156 lncRNA upstream 429741 6376100 ~ 6376980 (+) True G95974
TU109193 lncRNA upstream 559484 6239836 ~ 6247237 (+) True G96011
TU109144 lncRNA downstream 2781 6815647 ~ 6816180 (+) True G95962
TU109525 lncRNA downstream 116333 6923359 ~ 6924302 (+) True G96299
TU109531 lncRNA downstream 123380 6930406 ~ 6935195 (+) True G96305
TU109540 lncRNA downstream 128662 6935688 ~ 6936001 (+) True G96308
TU109548 lncRNA downstream 153411 6960437 ~ 6960751 (+) True G96314
CI01000016_06756366_06782229.mRNA mRNA upstream 24102 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_06684506_06687365.mRNA mRNA upstream 119316 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
CI01000016_06398455_06420062.mRNA mRNA upstream 386583 6398455 ~ 6420138 (+) True CI01000016_06398455_06420062
CI01000016_06270425_06375483.mRNA mRNA upstream 431238 6270425 ~ 6375483 (+) True CI01000016_06270425_06375483
CI01000016_06174800_06210259.mRNA mRNA upstream 595690 6174800 ~ 6211031 (+) True CI01000016_06174800_06210259
CI01000016_06813604_06813789.mRNA mRNA downstream 6578 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06890651_06904100.mRNA mRNA downstream 83120 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06954301_06958598.mRNA mRNA downstream 147275 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
CI01000016_07178060_07180135.mRNA mRNA downstream 371034 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
CI01000016_07214392_07233533.mRNA mRNA downstream 407366 7214392 ~ 7234762 (+) False CI01000016_07214392_07233533
TU109033 other upstream 1398858 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1398858 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1580780 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 1970066 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 2532816 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 353615 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 977039 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1207337 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2189072 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2988605 9795631 ~ 9795684 (+) True G99016

Expression Profile