RNA id: TU109525


Basic Information

Item Value
RNA id TU109525
length 487
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G96299
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6923359 ~ 6924302 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCTCTGTTTCCATGGAAACATGGCCAGGCTCCTCCGGGGATTCTCCATACGCCCCCTCGAGCGCTGCCTCCTCCTCCTTTTTGAAGACAGTGTAGAAGATGTACACCAGCAAAGAATAGAAGGCATACATGTTTCCTTATGTGCGGATGTTACAGCGACAGCGGCTGGAAATGCTTTGGCTTCACAGCATCCCTCTGCTCTTCCCACACATCTGCTGAGGTTGATCCTCCACCACTGCAGTTACTGCATTCTCATTCTTCCACTCTTAAGCTCTACATGGTGAATCTGCAGGAGTGTTTGTACCAGTGTTTCAGGGCTTTGGATGGCAACACCAGCTCTTGACTCCGCACATCTGTCCAACCTGCTATTCCTGGCTTCCTTTTTCCCCTCCTTTTCTCCTCCTCTCTCCTTATCCAGTTCTCTCCTCCCCCTTCCTCTCTCTCCTCAGCAGTGTTTGAGAGCGCTCAGCGCAGATGTGTAGTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109144 lncRNA upstream 107179 6815647 ~ 6816180 (+) True G95962
TU109463 lncRNA upstream 116333 6806721 ~ 6807026 (+) True G96257
TU109174 lncRNA upstream 195863 6727127 ~ 6727496 (+) True G95992
TU109442 lncRNA upstream 231516 6691190 ~ 6691843 (+) True G96236
TU109366 lncRNA upstream 438583 6484577 ~ 6484776 (+) True G96163
TU109531 lncRNA downstream 6104 6930406 ~ 6935195 (+) True G96305
TU109540 lncRNA downstream 11386 6935688 ~ 6936001 (+) True G96308
TU109548 lncRNA downstream 36135 6960437 ~ 6960751 (+) True G96314
TU109551 lncRNA downstream 39057 6963359 ~ 6963881 (+) True G96317
TU109550 lncRNA downstream 40829 6965131 ~ 6966188 (+) True G96316
CI01000016_06890651_06904100.mRNA mRNA upstream 18725 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06813604_06813789.mRNA mRNA upstream 109422 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06756366_06782229.mRNA mRNA upstream 140740 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_06684506_06687365.mRNA mRNA upstream 235954 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
CI01000016_06398455_06420062.mRNA mRNA upstream 503221 6398455 ~ 6420138 (+) True CI01000016_06398455_06420062
CI01000016_06954301_06958598.mRNA mRNA downstream 29999 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
CI01000016_07178060_07180135.mRNA mRNA downstream 253758 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
CI01000016_07214392_07233533.mRNA mRNA downstream 290090 7214392 ~ 7234762 (+) False CI01000016_07214392_07233533
CI01000016_07445055_07456795.mRNA mRNA downstream 520753 7445055 ~ 7457431 (+) True CI01000016_07445055_07456795
CI01000016_07463735_07471367.mRNA mRNA downstream 539433 7463735 ~ 7471828 (+) True CI01000016_07463735_07471367
TU109033 other upstream 1515496 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1515496 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1697418 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 2086704 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 2649454 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 236339 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 859763 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1090061 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2071796 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2871329 9795631 ~ 9795684 (+) True G99016

Expression Profile