RNA id: TU109540


Basic Information

Item Value
RNA id TU109540
length 314
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G96308
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6935688 ~ 6936001 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGACAAAAAGACTACTGTGGAGCCAGATTAGACTCATAAATATTTCACGCAAAAAACATGATGCACATAGCCAATTTCACATGCATGAAACCTAATTCGCATGCACAAAAAAAAAAAAAAATACATTCACAAAAAGCAATTCACATGCGCAAAATAAAGTGATATATTCATAAAACACATTTCACAAATGCAAAACACAATTCATAGATATACAACTGTGCACAAAAAGTTTCGAATGTAAAATTTATGAGTTTATCCTCACATTCGCGTGTGAATCGCCTTGGATTTGTGCGTGTGTATTTTTGAGACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109531 lncRNA upstream 493 6930406 ~ 6935195 (+) True G96305
TU109525 lncRNA upstream 11386 6923359 ~ 6924302 (+) True G96299
TU109144 lncRNA upstream 119508 6815647 ~ 6816180 (+) True G95962
TU109463 lncRNA upstream 128662 6806721 ~ 6807026 (+) True G96257
TU109174 lncRNA upstream 208192 6727127 ~ 6727496 (+) True G95992
TU109548 lncRNA downstream 24436 6960437 ~ 6960751 (+) True G96314
TU109551 lncRNA downstream 27358 6963359 ~ 6963881 (+) True G96317
TU109550 lncRNA downstream 29130 6965131 ~ 6966188 (+) True G96316
TU109552 lncRNA downstream 31565 6967566 ~ 6969600 (+) True G96318
TU109553 lncRNA downstream 34128 6970129 ~ 6970369 (+) True G96319
CI01000016_06890651_06904100.mRNA mRNA upstream 31054 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06813604_06813789.mRNA mRNA upstream 121751 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06756366_06782229.mRNA mRNA upstream 153069 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_06684506_06687365.mRNA mRNA upstream 248283 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
CI01000016_06398455_06420062.mRNA mRNA upstream 515550 6398455 ~ 6420138 (+) True CI01000016_06398455_06420062
CI01000016_06954301_06958598.mRNA mRNA downstream 18300 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
CI01000016_07178060_07180135.mRNA mRNA downstream 242059 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
CI01000016_07214392_07233533.mRNA mRNA downstream 278391 7214392 ~ 7234762 (+) False CI01000016_07214392_07233533
CI01000016_07445055_07456795.mRNA mRNA downstream 509054 7445055 ~ 7457431 (+) True CI01000016_07445055_07456795
CI01000016_07463735_07471367.mRNA mRNA downstream 527734 7463735 ~ 7471828 (+) True CI01000016_07463735_07471367
TU109033 other upstream 1527825 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1527825 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1709747 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 2099033 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 2661783 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 224640 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 848064 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1078362 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2060097 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2859630 9795631 ~ 9795684 (+) True G99016

Expression Profile