RNA id: TU109553


Basic Information

Item Value
RNA id TU109553
length 241
lncRNA type intronic
GC content 0.33
exon number 1
gene id G96319
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6970129 ~ 6970369 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTGGCTCACTTTGCCCCATAGCTGCCATTTTAGGAAAAGCTAGCTAGCTTACCAGTTCAGAATAACATTTAGCTAAATGACTTGCATGGTTTTATACGTTGCTAAAATCACGAATATTCATCATAAATATTTTTAGACCTGGACAAATTTGCTTTGATGAAACAGCCATTACATCTGTTATTTTAAAATTTTACTTTGACAAGCCAAAACAGTTTTTAAAGTAAATAAGCGACTTCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109552 lncRNA upstream 529 6967566 ~ 6969600 (+) True G96318
TU109550 lncRNA upstream 3941 6965131 ~ 6966188 (+) True G96316
TU109551 lncRNA upstream 6248 6963359 ~ 6963881 (+) True G96317
TU109548 lncRNA upstream 9378 6960437 ~ 6960751 (+) True G96314
TU109540 lncRNA upstream 34128 6935688 ~ 6936001 (+) True G96308
TU109554 lncRNA downstream 969 6971338 ~ 6972928 (+) True G96320
TU109533 lncRNA downstream 2748 6973117 ~ 7041786 (+) True G96306
TU109538 lncRNA downstream 33977 7004346 ~ 7007439 (+) False G96307
TU109536 lncRNA downstream 34880 7005249 ~ 7009159 (+) False G96307
TU109537 lncRNA downstream 34880 7005249 ~ 7039844 (+) False G96307
CI01000016_06954301_06958598.mRNA mRNA upstream 11526 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
CI01000016_06890651_06904100.mRNA mRNA upstream 65495 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06813604_06813789.mRNA mRNA upstream 156192 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06756366_06782229.mRNA mRNA upstream 187510 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_06684506_06687365.mRNA mRNA upstream 282724 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
CI01000016_07178060_07180135.mRNA mRNA downstream 207691 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
CI01000016_07214392_07233533.mRNA mRNA downstream 244023 7214392 ~ 7234762 (+) False CI01000016_07214392_07233533
CI01000016_07445055_07456795.mRNA mRNA downstream 474686 7445055 ~ 7457431 (+) True CI01000016_07445055_07456795
CI01000016_07463735_07471367.mRNA mRNA downstream 493366 7463735 ~ 7471828 (+) True CI01000016_07463735_07471367
CI01000016_07484583_07551063.mRNA mRNA downstream 514214 7484583 ~ 7551063 (+) True CI01000016_07484583_07551063
TU109033 other upstream 1562266 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1562266 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1744188 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 2133474 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 2696224 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 190272 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 813696 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1043994 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2025729 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2825262 9795631 ~ 9795684 (+) True G99016

Expression Profile