Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU109554 |
| length | 1591 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G96320 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 6971338 ~ 6972928 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU109553 | lncRNA | upstream | 969 | 6970129 ~ 6970369 (+) | True | G96319 |
| TU109552 | lncRNA | upstream | 1738 | 6967566 ~ 6969600 (+) | True | G96318 |
| TU109550 | lncRNA | upstream | 5150 | 6965131 ~ 6966188 (+) | True | G96316 |
| TU109551 | lncRNA | upstream | 7457 | 6963359 ~ 6963881 (+) | True | G96317 |
| TU109548 | lncRNA | upstream | 10587 | 6960437 ~ 6960751 (+) | True | G96314 |
| TU109533 | lncRNA | downstream | 189 | 6973117 ~ 7041786 (+) | True | G96306 |
| TU109538 | lncRNA | downstream | 31418 | 7004346 ~ 7007439 (+) | False | G96307 |
| TU109536 | lncRNA | downstream | 32321 | 7005249 ~ 7009159 (+) | False | G96307 |
| TU109537 | lncRNA | downstream | 32321 | 7005249 ~ 7039844 (+) | False | G96307 |
| TU109539 | lncRNA | downstream | 32321 | 7005249 ~ 7039487 (+) | True | G96307 |
| CI01000016_06954301_06958598.mRNA | mRNA | upstream | 12735 | 6954301 ~ 6958603 (+) | True | CI01000016_06954301_06958598 |
| CI01000016_06890651_06904100.mRNA | mRNA | upstream | 66704 | 6890146 ~ 6904634 (+) | True | CI01000016_06890651_06904100 |
| CI01000016_06813604_06813789.mRNA | mRNA | upstream | 157401 | 6813604 ~ 6813937 (+) | False | CI01000016_06813604_06813789 |
| CI01000016_06756366_06782229.mRNA | mRNA | upstream | 188719 | 6756366 ~ 6782619 (+) | True | CI01000016_06756366_06782229 |
| CI01000016_06684506_06687365.mRNA | mRNA | upstream | 283933 | 6684506 ~ 6687405 (+) | True | CI01000016_06684506_06687365 |
| CI01000016_07178060_07180135.mRNA | mRNA | downstream | 205132 | 7178060 ~ 7180810 (+) | True | CI01000016_07178060_07180135 |
| CI01000016_07214392_07233533.mRNA | mRNA | downstream | 241464 | 7214392 ~ 7234762 (+) | False | CI01000016_07214392_07233533 |
| CI01000016_07445055_07456795.mRNA | mRNA | downstream | 472127 | 7445055 ~ 7457431 (+) | True | CI01000016_07445055_07456795 |
| CI01000016_07463735_07471367.mRNA | mRNA | downstream | 490807 | 7463735 ~ 7471828 (+) | True | CI01000016_07463735_07471367 |
| CI01000016_07484583_07551063.mRNA | mRNA | downstream | 511655 | 7484583 ~ 7551063 (+) | True | CI01000016_07484583_07551063 |
| TU109033 | other | upstream | 1563475 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
| TU109031 | other | upstream | 1563475 | 5406748 ~ 5406829 (+) | True | G95870 |
| TU108946 | other | upstream | 1745397 | 5219880 ~ 5225941 (+) | True | G95792 |
| TU108629 | other | upstream | 2134683 | 4834558 ~ 4836655 (+) | True | G95503 |
| TU108786 | other | upstream | 2697433 | 4272636 ~ 4273905 (+) | True | G95648 |
| TU109637 | other | downstream | 187713 | 7160641 ~ 7161290 (+) | True | G96389 |
| TU111256 | other | downstream | 811137 | 7785226 ~ 7785723 (+) | True | G97766 |
| TU111320 | other | downstream | 1041435 | 8014363 ~ 8015775 (+) | True | G97824 |
| TU111822 | other | downstream | 2023170 | 8996098 ~ 9002717 (+) | True | G98288 |
| TU112665 | other | downstream | 2822703 | 9795631 ~ 9795684 (+) | True | G99016 |
