RNA id: TU109579


Basic Information

Item Value
RNA id TU109579
length 518
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G96335
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7049376 ~ 7049893 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTATCCAATATGGCTTCCTGTTGCTTCAGCCATCTAAGCCTATCTCCCCCTCTAATGTTTAATGACACTTGTTGCCAGTTACCTTCAAGGAATTGTCACTTCCATGTTTTCTTGTATAAAATGTTTCAGCATTGGATAATTCATATTTGCAGTGCGTAGAGTGGCTGAACACAGCCACTCTACGCACTGAAAATATGAATTATCCCATAGCGAAACATTTTATACTAAAATACTAAAAAAATTGAATTGAACTGAACTGCGCATAACATTACATTTGCAGCTCATTTTAACAAAAGGTCAGATGTCCTTGCTTCCTTTGAAGCACAAGATGCTCTTTGGATCAAATTATGCTGGATAACATGATCATCATGTCTTGCACAAATGTGTGGAGCCCGTACAGTGTTGATTAAGTGGCTATTAAACACAGGCATTGCTAATTCATACAGCAGTGTGCAAGCAAAAAACATAAATATTGCTTGTTTCTTATATCTTACATTTTTCTTATCATATCATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109533 lncRNA upstream 7590 6973117 ~ 7041786 (+) True G96306
TU109537 lncRNA upstream 9532 7005249 ~ 7039844 (+) False G96307
TU109539 lncRNA upstream 9889 7005249 ~ 7039487 (+) True G96307
TU109536 lncRNA upstream 40217 7005249 ~ 7009159 (+) False G96307
TU109538 lncRNA upstream 41937 7004346 ~ 7007439 (+) False G96307
TU109583 lncRNA downstream 6524 7056417 ~ 7057100 (+) True G96338
TU109587 lncRNA downstream 7613 7057506 ~ 7057708 (+) True G96339
TU109589 lncRNA downstream 9243 7059136 ~ 7059596 (+) True G96341
TU109590 lncRNA downstream 11332 7061225 ~ 7061427 (+) True G96342
TU109592 lncRNA downstream 13666 7063559 ~ 7063804 (+) True G96344
CI01000016_06954301_06958598.mRNA mRNA upstream 90773 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
CI01000016_06890651_06904100.mRNA mRNA upstream 144742 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06813604_06813789.mRNA mRNA upstream 235439 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06756366_06782229.mRNA mRNA upstream 266757 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_06684506_06687365.mRNA mRNA upstream 361971 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
CI01000016_07178060_07180135.mRNA mRNA downstream 128167 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
CI01000016_07214392_07233533.mRNA mRNA downstream 164499 7214392 ~ 7234762 (+) False CI01000016_07214392_07233533
CI01000016_07445055_07456795.mRNA mRNA downstream 395162 7445055 ~ 7457431 (+) True CI01000016_07445055_07456795
CI01000016_07463735_07471367.mRNA mRNA downstream 413842 7463735 ~ 7471828 (+) True CI01000016_07463735_07471367
CI01000016_07484583_07551063.mRNA mRNA downstream 434690 7484583 ~ 7551063 (+) True CI01000016_07484583_07551063
TU109033 other upstream 1641513 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1641513 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1823435 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 2212721 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 2775471 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 110748 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 734172 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 964470 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 1946205 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2745738 9795631 ~ 9795684 (+) True G99016

Expression Profile