RNA id: TU109595


Basic Information

Item Value
RNA id TU109595
length 383
lncRNA type intronic
GC content 0.30
exon number 1
gene id G96347
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7067239 ~ 7067621 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAACTTGGTCATATAATTTTAACATAGTGTGATGATAAAAACATTAAACACTCACAAAATTCATCAAAAGATCCAGGCTGCTATTGTTTACAAATTCAACACACATTTTACAGAAATGACAAAGTTTTTCTAAATATATAAAAATTGGCCATCTCAATAACAGTCGTGAAAGATTAAAGTAATATCACAAGTACCATTATTTCTACCATCTATACTATTCAGCAGCTTTTCTTAAACTATACACGTGTTATGATAACTTAAATATAAGACATGAAGCCTAATAAATGGCTCAGGGTAATTTCAATCCTGTGTTCATCATGCTTGTAGAGGTACCTACACTGTTAAATAGTTTAGAAAGATTGTAATGTTTTGGAATACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109592 lncRNA upstream 3435 7063559 ~ 7063804 (+) True G96344
TU109590 lncRNA upstream 5812 7061225 ~ 7061427 (+) True G96342
TU109589 lncRNA upstream 7643 7059136 ~ 7059596 (+) True G96341
TU109587 lncRNA upstream 9531 7057506 ~ 7057708 (+) True G96339
TU109583 lncRNA upstream 10139 7056417 ~ 7057100 (+) True G96338
TU109598 lncRNA downstream 3771 7071392 ~ 7072805 (+) True G96350
TU109607 lncRNA downstream 17747 7085368 ~ 7085785 (+) True G96359
TU109613 lncRNA downstream 38358 7105979 ~ 7106207 (+) True G96365
TU109624 lncRNA downstream 49609 7117230 ~ 7117462 (+) True G96376
TU109631 lncRNA downstream 72654 7140275 ~ 7140478 (+) True G96383
CI01000016_06954301_06958598.mRNA mRNA upstream 108636 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
CI01000016_06890651_06904100.mRNA mRNA upstream 162605 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06813604_06813789.mRNA mRNA upstream 253302 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06756366_06782229.mRNA mRNA upstream 284620 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_06684506_06687365.mRNA mRNA upstream 379834 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
CI01000016_07178060_07180135.mRNA mRNA downstream 110439 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
CI01000016_07214392_07233533.mRNA mRNA downstream 146771 7214392 ~ 7234762 (+) False CI01000016_07214392_07233533
CI01000016_07445055_07456795.mRNA mRNA downstream 377434 7445055 ~ 7457431 (+) True CI01000016_07445055_07456795
CI01000016_07463735_07471367.mRNA mRNA downstream 396114 7463735 ~ 7471828 (+) True CI01000016_07463735_07471367
CI01000016_07484583_07551063.mRNA mRNA downstream 416962 7484583 ~ 7551063 (+) True CI01000016_07484583_07551063
TU109033 other upstream 1659376 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1659376 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1841298 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 2230584 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 2793334 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 93020 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 716444 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 946742 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 1928477 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2728010 9795631 ~ 9795684 (+) True G99016

Expression Profile