Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU109637 |
| length | 650 |
| RNA type | TUCP |
| GC content | 0.52 |
| exon number | 1 |
| gene id | G96389 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 7160641 ~ 7161290 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU109631 | lncRNA | upstream | 20163 | 7140275 ~ 7140478 (+) | True | G96383 |
| TU109624 | lncRNA | upstream | 43179 | 7117230 ~ 7117462 (+) | True | G96376 |
| TU109613 | lncRNA | upstream | 54434 | 7105979 ~ 7106207 (+) | True | G96365 |
| TU109607 | lncRNA | upstream | 74856 | 7085368 ~ 7085785 (+) | True | G96359 |
| TU109598 | lncRNA | upstream | 87836 | 7071392 ~ 7072805 (+) | True | G96350 |
| TU109640 | lncRNA | downstream | 3313 | 7164603 ~ 7164834 (+) | True | G96392 |
| TU109644 | lncRNA | downstream | 7393 | 7168683 ~ 7169000 (+) | True | G96396 |
| TU109645 | lncRNA | downstream | 20721 | 7182011 ~ 7182239 (+) | True | G96397 |
| TU109653 | lncRNA | downstream | 43861 | 7205151 ~ 7205501 (+) | True | G96405 |
| TU109654 | lncRNA | downstream | 44299 | 7205589 ~ 7211423 (+) | True | G96406 |
| CI01000016_06954301_06958598.mRNA | mRNA | upstream | 202038 | 6954301 ~ 6958603 (+) | True | CI01000016_06954301_06958598 |
| CI01000016_06890651_06904100.mRNA | mRNA | upstream | 256007 | 6890146 ~ 6904634 (+) | True | CI01000016_06890651_06904100 |
| CI01000016_06813604_06813789.mRNA | mRNA | upstream | 346704 | 6813604 ~ 6813937 (+) | False | CI01000016_06813604_06813789 |
| CI01000016_06756366_06782229.mRNA | mRNA | upstream | 378022 | 6756366 ~ 6782619 (+) | True | CI01000016_06756366_06782229 |
| CI01000016_06684506_06687365.mRNA | mRNA | upstream | 473236 | 6684506 ~ 6687405 (+) | True | CI01000016_06684506_06687365 |
| CI01000016_07178060_07180135.mRNA | mRNA | downstream | 16770 | 7178060 ~ 7180810 (+) | True | CI01000016_07178060_07180135 |
| CI01000016_07214392_07233533.mRNA | mRNA | downstream | 53102 | 7214392 ~ 7234762 (+) | False | CI01000016_07214392_07233533 |
| CI01000016_07445055_07456795.mRNA | mRNA | downstream | 283765 | 7445055 ~ 7457431 (+) | True | CI01000016_07445055_07456795 |
| CI01000016_07463735_07471367.mRNA | mRNA | downstream | 302445 | 7463735 ~ 7471828 (+) | True | CI01000016_07463735_07471367 |
| CI01000016_07484583_07551063.mRNA | mRNA | downstream | 323293 | 7484583 ~ 7551063 (+) | True | CI01000016_07484583_07551063 |
| TU109033 | other | upstream | 1752778 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
| TU109031 | other | upstream | 1752778 | 5406748 ~ 5406829 (+) | True | G95870 |
| TU108946 | other | upstream | 1934700 | 5219880 ~ 5225941 (+) | True | G95792 |
| TU108629 | other | upstream | 2323986 | 4834558 ~ 4836655 (+) | True | G95503 |
| TU108786 | other | upstream | 2886736 | 4272636 ~ 4273905 (+) | True | G95648 |
| TU111256 | other | downstream | 622775 | 7785226 ~ 7785723 (+) | True | G97766 |
| TU111320 | other | downstream | 853073 | 8014363 ~ 8015775 (+) | True | G97824 |
| TU111822 | other | downstream | 1834808 | 8996098 ~ 9002717 (+) | True | G98288 |
| TU112665 | other | downstream | 2634341 | 9795631 ~ 9795684 (+) | True | G99016 |
| TU112690 | other | downstream | 2763128 | 9924418 ~ 9925654 (+) | True | G99041 |
