RNA id: TU109654


Basic Information

Item Value
RNA id TU109654
length 468
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G96406
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7205589 ~ 7211423 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAAAACCAGTGGGAAGTTTAGGTCACAAAACATTACAAAACGAATGTGTAAAATATGCGACTCTAAATACTTGCAATAGAAAATCTTACCATTAAAGCATACAAATGGCCTTTTTGAGTCACAGCTATCACTAAACCATTCCCCATTGTTGTTCATTGCAGCACAGCCATGATTATTATTTTGATCTGGTTGTTTATCTTTCCAGTTTTGGAACGGCTCTACATTGGAACTGTCTGGCAGTGTCCAGTGCCATCTGAACACTTCACTTCTATAAAGTCCAATGTACACATCATACGAAACATCACTTATGGTTCTGAACAAGCTGTTCATCTCTTCTGCATTATTCACAGTCGCCAGGTCAGTGTAATTCTCACGGCAGAATCTCTGAGCCTCAGTCCAGTTCTTTCTGATATTTATGAAGTGATACTGGTGAGATATTTGGCTTGAAGTGAAGGACAAAAGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109653 lncRNA upstream 88 7205151 ~ 7205501 (+) True G96405
TU109645 lncRNA upstream 23350 7182011 ~ 7182239 (+) True G96397
TU109644 lncRNA upstream 36589 7168683 ~ 7169000 (+) True G96396
TU109640 lncRNA upstream 40755 7164603 ~ 7164834 (+) True G96392
TU109631 lncRNA upstream 65111 7140275 ~ 7140478 (+) True G96383
TU109486 lncRNA downstream 15200 7226623 ~ 7234962 (+) True CI01000016_07214392_07233533
TU109489 lncRNA downstream 23744 7235167 ~ 7242286 (+) False G96276
TU109495 lncRNA downstream 28561 7239984 ~ 7242189 (+) True G96276
TU109662 lncRNA downstream 52295 7263718 ~ 7264594 (+) True G96414
TU109665 lncRNA downstream 73648 7285071 ~ 7286600 (+) True G96415
CI01000016_07178060_07180135.mRNA mRNA upstream 24779 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
CI01000016_06954301_06958598.mRNA mRNA upstream 246986 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
CI01000016_06890651_06904100.mRNA mRNA upstream 300955 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06813604_06813789.mRNA mRNA upstream 391652 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06756366_06782229.mRNA mRNA upstream 422970 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_07214392_07233533.mRNA mRNA downstream 2969 7214392 ~ 7234762 (+) False CI01000016_07214392_07233533
CI01000016_07445055_07456795.mRNA mRNA downstream 233632 7445055 ~ 7457431 (+) True CI01000016_07445055_07456795
CI01000016_07463735_07471367.mRNA mRNA downstream 252312 7463735 ~ 7471828 (+) True CI01000016_07463735_07471367
CI01000016_07484583_07551063.mRNA mRNA downstream 273160 7484583 ~ 7551063 (+) True CI01000016_07484583_07551063
CI01000016_07711605_07715888.mRNA mRNA downstream 500182 7711605 ~ 7716261 (+) True CI01000016_07711605_07715888
TU109637 other upstream 44299 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 1797726 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1797726 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1979648 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 2368934 4834558 ~ 4836655 (+) True G95503
TU111256 other downstream 572642 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 802940 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 1784675 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2584208 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 2712995 9924418 ~ 9925654 (+) True G99041

Expression Profile