RNA id: TU111205


Basic Information

Item Value
RNA id TU111205
length 312
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G97724
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7652042 ~ 7652353 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAGCACACACTGATACCAAGACGACGAAGAGGAAGTAAGTAGACGAGAAAGACCCCTACAAACTATGGGTGCTCTGCCAGTTCTTGGCCACAACAATAGATGTGTATTATATGCCATTTTATTTCTGTATTTTTACTGTTTTTTTTTTTTTTCTTTTATATTCAAGAAATATAGAAGTTGAGAATGTCTATTTCATAAATATGTTTATTTGCACTACTGTTCACTTGCACTACTGTCATTGTGACTTATTTGCACTACCGTTTCTGACTACCATCTCCTCATGTTATGTATATGCCATAAATGCCATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109781 lncRNA upstream 97502 7554210 ~ 7554540 (+) True G96518
TU109704 lncRNA upstream 321031 7329766 ~ 7331011 (+) True G96453
TU109507 lncRNA upstream 340164 7310044 ~ 7311878 (+) True G96283
TU109665 lncRNA upstream 365442 7285071 ~ 7286600 (+) True G96415
TU109662 lncRNA upstream 387448 7263718 ~ 7264594 (+) True G96414
TU111249 lncRNA downstream 119285 7771638 ~ 7771965 (+) True G97760
TU111253 lncRNA downstream 125718 7778071 ~ 7778392 (+) True G97764
TU111232 lncRNA downstream 173035 7825388 ~ 7827695 (+) True G97745
TU111233 lncRNA downstream 193563 7845916 ~ 7847529 (+) True G97746
TU111234 lncRNA downstream 195304 7847657 ~ 7859181 (+) True G97747
CI01000016_07484583_07551063.mRNA mRNA upstream 100979 7484583 ~ 7551063 (+) True CI01000016_07484583_07551063
CI01000016_07463735_07471367.mRNA mRNA upstream 180214 7463735 ~ 7471828 (+) True CI01000016_07463735_07471367
CI01000016_07445055_07456795.mRNA mRNA upstream 194611 7445055 ~ 7457431 (+) True CI01000016_07445055_07456795
CI01000016_07214392_07233533.mRNA mRNA upstream 417280 7214392 ~ 7234762 (+) False CI01000016_07214392_07233533
CI01000016_07178060_07180135.mRNA mRNA upstream 471232 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
CI01000016_07711605_07715888.mRNA mRNA downstream 59252 7711605 ~ 7716261 (+) True CI01000016_07711605_07715888
CI01000016_07743396_07746536.mRNA mRNA downstream 90735 7743088 ~ 7747383 (+) True CI01000016_07743396_07746536
CI01000016_07759095_07759370.mRNA mRNA downstream 106742 7759095 ~ 7761274 (+) True CI01000016_07759095_07759370
CI01000016_07784248_07784757.mRNA mRNA downstream 131634 7783987 ~ 7784996 (+) False CI01000016_07784248_07784757
CI01000016_07851297_07854401.mRNA mRNA downstream 198403 7850756 ~ 7854610 (+) True CI01000016_07851297_07854401
TU109637 other upstream 490752 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 2244179 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 2244179 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 2426101 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 2815387 4834558 ~ 4836655 (+) True G95503
TU111256 other downstream 131712 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 362010 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 1343745 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2143278 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 2272065 9924418 ~ 9925654 (+) True G99041

Expression Profile