RNA id: TU111249


Basic Information

Item Value
RNA id TU111249
length 328
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G97760
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7771638 ~ 7771965 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAGATATGGAAATACATAGGTTGACAGGACATCGTATCATTGCATTCGGACCAAATGCAATCATTGGATAAACATTTTTTAATACTGAGACTTCCACTGAAGATATATGTACATTTAATATTTAGACCACTTCTACTATTAATTGCTATCACGATGTGAAGAGAGTTTCAACCAGTATAACAAAAAGTGTTTATAAACCAAATTGCCTACACTACCTTTAACAATCATTAATCATTCTCCTCATCGCCATGAATTAAGTTTATGGTTTATGGTATCAAAATTATCCCTGAACTTTGCAGTGGTAAATACGACTTGTGAGGGCATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111205 lncRNA upstream 119285 7652042 ~ 7652353 (+) True G97724
TU109781 lncRNA upstream 217098 7554210 ~ 7554540 (+) True G96518
TU109704 lncRNA upstream 440627 7329766 ~ 7331011 (+) True G96453
TU109507 lncRNA upstream 459760 7310044 ~ 7311878 (+) True G96283
TU109665 lncRNA upstream 485038 7285071 ~ 7286600 (+) True G96415
TU111253 lncRNA downstream 6106 7778071 ~ 7778392 (+) True G97764
TU111232 lncRNA downstream 53423 7825388 ~ 7827695 (+) True G97745
TU111233 lncRNA downstream 73951 7845916 ~ 7847529 (+) True G97746
TU111234 lncRNA downstream 75692 7847657 ~ 7859181 (+) True G97747
TU111284 lncRNA downstream 134259 7906224 ~ 7906558 (+) True G97788
CI01000016_07759095_07759370.mRNA mRNA upstream 10364 7759095 ~ 7761274 (+) True CI01000016_07759095_07759370
CI01000016_07743396_07746536.mRNA mRNA upstream 24255 7743088 ~ 7747383 (+) True CI01000016_07743396_07746536
CI01000016_07711605_07715888.mRNA mRNA upstream 55377 7711605 ~ 7716261 (+) True CI01000016_07711605_07715888
CI01000016_07484583_07551063.mRNA mRNA upstream 220575 7484583 ~ 7551063 (+) True CI01000016_07484583_07551063
CI01000016_07463735_07471367.mRNA mRNA upstream 299810 7463735 ~ 7471828 (+) True CI01000016_07463735_07471367
CI01000016_07784248_07784757.mRNA mRNA downstream 12022 7783987 ~ 7784996 (+) False CI01000016_07784248_07784757
CI01000016_07851297_07854401.mRNA mRNA downstream 78791 7850756 ~ 7854610 (+) True CI01000016_07851297_07854401
CI01000016_07937188_07955977.mRNA mRNA downstream 165223 7937188 ~ 7956457 (+) True CI01000016_07937188_07955977
CI01000016_07956184_07965721.mRNA mRNA downstream 184106 7956071 ~ 7965940 (+) False CI01000016_07956184_07965721
CI01000016_07969424_07983149.mRNA mRNA downstream 196363 7968328 ~ 7983301 (+) False CI01000016_07969424_07983149
TU109637 other upstream 610348 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 2363775 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 2363775 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 2545697 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 2934983 4834558 ~ 4836655 (+) True G95503
TU111256 other downstream 12100 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 242398 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 1224133 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2023666 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 2152453 9924418 ~ 9925654 (+) True G99041

Expression Profile