Item | Value |
---|---|
RNA id | TU111320 |
length | 1413 |
RNA type | TUCP |
GC content | 0.44 |
exon number | 1 |
gene id | G97824 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000016 |
NCBI id | null |
chromosome length | 12175457 |
location | 8014363 ~ 8015775 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU111314 | lncRNA | upstream | 30797 | 7982169 ~ 7983566 (+) | True | CI01000016_07969424_07983149 |
TU111324 | lncRNA | upstream | 48682 | 7964637 ~ 7964680 (+) | True | G97828 |
TU111329 | lncRNA | upstream | 55041 | 7958249 ~ 7959322 (+) | False | CI01000016_07956184_07965721 |
TU111284 | lncRNA | upstream | 107805 | 7906224 ~ 7906558 (+) | True | G97788 |
TU111234 | lncRNA | upstream | 155182 | 7847657 ~ 7859181 (+) | True | G97747 |
TU111322 | lncRNA | downstream | 43194 | 8058969 ~ 8063310 (+) | True | G97826 |
TU111646 | lncRNA | downstream | 234613 | 8250388 ~ 8261533 (+) | True | G98116 |
TU111684 | lncRNA | downstream | 327336 | 8343111 ~ 8343467 (+) | True | G98151 |
TU111685 | lncRNA | downstream | 330917 | 8346692 ~ 8346893 (+) | True | G98152 |
TU111688 | lncRNA | downstream | 342248 | 8358023 ~ 8358279 (+) | True | G98155 |
CI01000016_07998560_08008403.mRNA | mRNA | upstream | 5917 | 7998560 ~ 8008446 (+) | True | CI01000016_07998560_08008403 |
CI01000016_07969424_07983149.mRNA | mRNA | upstream | 31062 | 7968328 ~ 7983301 (+) | False | CI01000016_07969424_07983149 |
CI01000016_07956184_07965721.mRNA | mRNA | upstream | 48423 | 7956071 ~ 7965940 (+) | False | CI01000016_07956184_07965721 |
CI01000016_07937188_07955977.mRNA | mRNA | upstream | 57906 | 7937188 ~ 7956457 (+) | True | CI01000016_07937188_07955977 |
CI01000016_07851297_07854401.mRNA | mRNA | upstream | 159753 | 7850756 ~ 7854610 (+) | True | CI01000016_07851297_07854401 |
CI01000016_08034844_08037586.mRNA | mRNA | downstream | 19069 | 8034844 ~ 8038025 (+) | True | CI01000016_08034844_08037586 |
CI01000016_08090285_08090545.mRNA | mRNA | downstream | 74510 | 8090285 ~ 8090594 (+) | True | CI01000016_08090285_08090545 |
CI01000016_08092843_08098938.mRNA | mRNA | downstream | 76998 | 8092773 ~ 8098938 (+) | True | CI01000016_08092843_08098938 |
CI01000016_08205087_08210367.mRNA | mRNA | downstream | 189079 | 8204854 ~ 8211114 (+) | True | CI01000016_08205087_08210367 |
CI01000016_08217170_08228700.mRNA | mRNA | downstream | 201309 | 8217084 ~ 8228778 (+) | True | CI01000016_08217170_08228700 |
TU111256 | other | upstream | 228640 | 7785226 ~ 7785723 (+) | True | G97766 |
TU109637 | other | upstream | 853073 | 7160641 ~ 7161290 (+) | True | G96389 |
TU109033 | other | upstream | 2606500 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
TU109031 | other | upstream | 2606500 | 5406748 ~ 5406829 (+) | True | G95870 |
TU108946 | other | upstream | 2788422 | 5219880 ~ 5225941 (+) | True | G95792 |
TU111822 | other | downstream | 980323 | 8996098 ~ 9002717 (+) | True | G98288 |
TU112665 | other | downstream | 1779856 | 9795631 ~ 9795684 (+) | True | G99016 |
TU112690 | other | downstream | 1908643 | 9924418 ~ 9925654 (+) | True | G99041 |
TU113122 | other | downstream | 2218625 | 10234400 ~ 10236851 (+) | True | G99410 |
TU113168 | other | downstream | 2278616 | 10294391 ~ 10298904 (+) | True | G99456 |