RNA id: TU111320



Basic Information


Item Value
RNA id TU111320
length 1413
RNA type TUCP
GC content 0.44
exon number 1
gene id G97824
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8014363 ~ 8015775 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCAGATTGTGTCAAAGCAGCTTTACAGTGATAACTGGTATATCATTTTGGCTGCACAGCAGCTCTTAAAGAAAATGGTGTCATTAAGTCATCTTAAGTAGATTCAGTATTGATTCATTCCGATGTAAGAATCAATAGTTATTAATTTAGTTACTTTATATATCAGCACTGGAGTAAACAGTGATGTCATTATCCAGCTCAGTTCAGTTCGCATACAGTGGTGTCAATGCAGGCAGATCAAAACACTGTTGAATATCAAATGCCAAGCGTCCCCAACTAAGCAAGCCAAAGTTAAAATGTTAAAATGGAGAAAAAAAACCTTGGGAGAAACCAGCCTTAGTCGGGGGGCCAGTTCTCCTCTGGCCAACAGCGAACAGTGCTTTATTATAATTCAGGCAGCTATCATAAGTCAGATGGGATCGCAACATTCAAAGTATTTATTCCAGTTCCATCCAGTTGAGGATCGTATTCATCACGCTGGTATGGACAGTTTGTTGAGGAACTGTGCCACTGGCTGTCGTGTCGATGAGGCCTTCACAGTGGATGATCTAGTTGACTCAATCTCTGCTGACACTTCAGGGCTGCGTTGTGGTCGTGTCAAGGCGCAGGTCCTCGATCTCACCTGGATACGGCCCGGATCCGGCTAACTACGGTAAACCTCGGGATAAACAGAGAGACTAATATTAGCGTAGATGCCATTCTTCTTCTGATGTAACGAGTACATCTGGTGTTATAGGAAGTTATAACTTCCTAGGTCTGTGAAAGTGATTTTGTGCCTCTTTGGGATGGCTCCACAAGATGCCGTTCACTTGTAGAACGCAAGCTTCTGGAGGGCACATAGGTCTGAAGTAGTGAGTTTAGCTAAATTCTGGATCATTTGCAGGTTTGACAGTACATGCTGGAAGGCCTGCCAAGAGAGCATTACAACAGTCCAATCTGGATAGAACAAGAGCTTGGACAAGGAATTGTGTAGCATGCTCCAACAGGAAGGGCCAGATCTTTTCTAATGTTGTATGAGGCAAATCTGCAGTTCTAGTAATGTGGTCTGTGAAGTTTAAATCATCAATCACAACTGCAAGGTTCCTGGCTGACTTGGAAGGAGTTATGGTTGACGAACCTTGCTGAATGGAGAAGTTGTGATGAAGTGTTGGGTTGGCTGAGACCACAAGCAGCTCTGTCTTTGCAAGGTTGAGTTGAAGGTGGTCCTTCATCCAGGCAGAAATGTCTGTCAGGCAGGCTGAGATGCGAGCAGCTACCACTGGATCATCTGGCTGGAATGAGTGGAGTTGTGTGTCATCATCAAGACTTTGTCCAGACTGGATTCAGAATGATGATCAAAACATAGATCGAGTATAGACTAAGCCTGTCAACCCCTCCAAAGCTTGTACAGTCATATACCTCTTTGTAGGTTTGA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111314 lncRNA upstream 30797 7982169 ~ 7983566 (+) True CI01000016_07969424_07983149
TU111324 lncRNA upstream 48682 7964637 ~ 7964680 (+) True G97828
TU111329 lncRNA upstream 55041 7958249 ~ 7959322 (+) False CI01000016_07956184_07965721
TU111284 lncRNA upstream 107805 7906224 ~ 7906558 (+) True G97788
TU111234 lncRNA upstream 155182 7847657 ~ 7859181 (+) True G97747
TU111322 lncRNA downstream 43194 8058969 ~ 8063310 (+) True G97826
TU111646 lncRNA downstream 234613 8250388 ~ 8261533 (+) True G98116
TU111684 lncRNA downstream 327336 8343111 ~ 8343467 (+) True G98151
TU111685 lncRNA downstream 330917 8346692 ~ 8346893 (+) True G98152
TU111688 lncRNA downstream 342248 8358023 ~ 8358279 (+) True G98155
CI01000016_07998560_08008403.mRNA mRNA upstream 5917 7998560 ~ 8008446 (+) True CI01000016_07998560_08008403
CI01000016_07969424_07983149.mRNA mRNA upstream 31062 7968328 ~ 7983301 (+) False CI01000016_07969424_07983149
CI01000016_07956184_07965721.mRNA mRNA upstream 48423 7956071 ~ 7965940 (+) False CI01000016_07956184_07965721
CI01000016_07937188_07955977.mRNA mRNA upstream 57906 7937188 ~ 7956457 (+) True CI01000016_07937188_07955977
CI01000016_07851297_07854401.mRNA mRNA upstream 159753 7850756 ~ 7854610 (+) True CI01000016_07851297_07854401
CI01000016_08034844_08037586.mRNA mRNA downstream 19069 8034844 ~ 8038025 (+) True CI01000016_08034844_08037586
CI01000016_08090285_08090545.mRNA mRNA downstream 74510 8090285 ~ 8090594 (+) True CI01000016_08090285_08090545
CI01000016_08092843_08098938.mRNA mRNA downstream 76998 8092773 ~ 8098938 (+) True CI01000016_08092843_08098938
CI01000016_08205087_08210367.mRNA mRNA downstream 189079 8204854 ~ 8211114 (+) True CI01000016_08205087_08210367
CI01000016_08217170_08228700.mRNA mRNA downstream 201309 8217084 ~ 8228778 (+) True CI01000016_08217170_08228700
TU111256 other upstream 228640 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 853073 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 2606500 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 2606500 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 2788422 5219880 ~ 5225941 (+) True G95792
TU111822 other downstream 980323 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 1779856 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1908643 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 2218625 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 2278616 10294391 ~ 10298904 (+) True G99456

Expression Profile