RNA id: TU111685


Basic Information

Item Value
RNA id TU111685
length 202
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G98152
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8346692 ~ 8346893 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCGGAGCTGAGTGGAATATGGTTATTATGGATGGATGTGGATGGAGACACTTTCTTCAGCTCATACTCTTTTGGTAACACTTACTGCCATTATAAAGCTTGGATGCATCAGGATCTTTATTAATATTTCTCTGATTATGTTCATCAGAAAGAAGAAAGTCATATACACCTAGGATGGCTTGAGGGTGAATAAAGCTTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111684 lncRNA upstream 3225 8343111 ~ 8343467 (+) True G98151
TU111646 lncRNA upstream 77714 8250388 ~ 8261533 (+) True G98116
TU111322 lncRNA upstream 283382 8058969 ~ 8063310 (+) True G97826
TU111314 lncRNA upstream 363126 7982169 ~ 7983566 (+) True CI01000016_07969424_07983149
TU111324 lncRNA upstream 381011 7964637 ~ 7964680 (+) True G97828
TU111688 lncRNA downstream 11130 8358023 ~ 8358279 (+) True G98155
TU111633 lncRNA downstream 11752 8358645 ~ 8374582 (+) True G98103
TU111702 lncRNA downstream 29628 8376521 ~ 8376813 (+) True G98169
TU111644 lncRNA downstream 37926 8384819 ~ 8389583 (+) True G98114
TU111710 lncRNA downstream 59172 8406065 ~ 8406296 (+) True G98177
CI01000016_08323079_08336573.mRNA mRNA upstream 10005 8323079 ~ 8336687 (+) True CI01000016_08323079_08336573
CI01000016_08315282_08316952.mRNA mRNA upstream 29514 8314973 ~ 8317178 (+) True CI01000016_08315282_08316952
CI01000016_08304658_08306198.mRNA mRNA upstream 39900 8302914 ~ 8306792 (+) True CI01000016_08304658_08306198
CI01000016_08299340_08301616.mRNA mRNA upstream 45076 8299340 ~ 8301616 (+) True CI01000016_08299340_08301616
CI01000016_08293872_08295500.mRNA mRNA upstream 51192 8293872 ~ 8295500 (+) True CI01000016_08293872_08295500
CI01000016_08390421_08396972.mRNA mRNA downstream 43396 8390289 ~ 8397755 (+) False CI01000016_08390421_08396972
CI01000016_08450823_08453343.mRNA mRNA downstream 103735 8450628 ~ 8453377 (+) True CI01000016_08450823_08453343
CI01000016_08513514_08545976.mRNA mRNA downstream 166621 8513514 ~ 8546137 (+) True CI01000016_08513514_08545976
CI01000016_08553934_08565167.mRNA mRNA downstream 205950 8552843 ~ 8565246 (+) True CI01000016_08553934_08565167
CI01000016_08628196_08630801.mRNA mRNA downstream 281303 8628196 ~ 8631378 (+) True CI01000016_08628196_08630801
TU111320 other upstream 330917 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 560969 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1185402 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 2938829 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 649205 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 1448738 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1577525 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1887507 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1947498 10294391 ~ 10298904 (+) True G99456

Expression Profile