RNA id: TU111729


Basic Information

Item Value
RNA id TU111729
length 244
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G98195
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8458828 ~ 8459071 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCACGGGTATATTTGTAGCAATAGCCAACAATACATTATATGGGTCAAAATTATCGATTTTTCTTTTATGCCAAAAATCATTAGGATATTAAGTAAAGATCATGTTCCATGAAGATATTTTGTACATTTCCTACTGTGAATATATCAAAATTTTATTTTTGTGAGTGGATATGCGTTGCTAAGGACTTCATTTGGACAACTTTAAAGGTGATTTTCTCAATAAGTTTTTTTTTTTTTTGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111727 lncRNA upstream 662 8457949 ~ 8458166 (+) True G98193
TU111710 lncRNA upstream 52532 8406065 ~ 8406296 (+) True G98177
TU111644 lncRNA upstream 66379 8384819 ~ 8389583 (+) True G98114
TU111702 lncRNA upstream 82015 8376521 ~ 8376813 (+) True G98169
TU111633 lncRNA upstream 84246 8358645 ~ 8374582 (+) True G98103
TU111627 lncRNA downstream 107758 8566829 ~ 8569687 (+) True G98098
TU111754 lncRNA downstream 145527 8604598 ~ 8604812 (+) True G98220
TU111755 lncRNA downstream 146152 8605223 ~ 8605440 (+) True G98221
TU111756 lncRNA downstream 148331 8607402 ~ 8607866 (+) True G98222
TU111757 lncRNA downstream 153893 8612964 ~ 8613740 (+) True G98223
CI01000016_08450823_08453343.mRNA mRNA upstream 5451 8450628 ~ 8453377 (+) True CI01000016_08450823_08453343
CI01000016_08390421_08396972.mRNA mRNA upstream 61073 8390289 ~ 8397755 (+) False CI01000016_08390421_08396972
CI01000016_08323079_08336573.mRNA mRNA upstream 122141 8323079 ~ 8336687 (+) True CI01000016_08323079_08336573
CI01000016_08315282_08316952.mRNA mRNA upstream 141650 8314973 ~ 8317178 (+) True CI01000016_08315282_08316952
CI01000016_08304658_08306198.mRNA mRNA upstream 152036 8302914 ~ 8306792 (+) True CI01000016_08304658_08306198
CI01000016_08513514_08545976.mRNA mRNA downstream 54443 8513514 ~ 8546137 (+) True CI01000016_08513514_08545976
CI01000016_08553934_08565167.mRNA mRNA downstream 93772 8552843 ~ 8565246 (+) True CI01000016_08553934_08565167
CI01000016_08628196_08630801.mRNA mRNA downstream 169125 8628196 ~ 8631378 (+) True CI01000016_08628196_08630801
CI01000016_08675783_08684401.mRNA mRNA downstream 214340 8673411 ~ 8684506 (+) True CI01000016_08675783_08684401
CI01000016_08696516_08734418.mRNA mRNA downstream 237445 8696516 ~ 8734660 (+) True CI01000016_08696516_08734418
TU111320 other upstream 443053 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 673105 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1297538 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 3050965 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 537027 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 1336560 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1465347 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1775329 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1835320 10294391 ~ 10298904 (+) True G99456

Expression Profile