Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU111627 |
| length | 2859 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G98098 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 8566829 ~ 8569687 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU111729 | lncRNA | upstream | 107758 | 8458828 ~ 8459071 (+) | True | G98195 |
| TU111727 | lncRNA | upstream | 108663 | 8457949 ~ 8458166 (+) | True | G98193 |
| TU111710 | lncRNA | upstream | 160533 | 8406065 ~ 8406296 (+) | True | G98177 |
| TU111644 | lncRNA | upstream | 174380 | 8384819 ~ 8389583 (+) | True | G98114 |
| TU111702 | lncRNA | upstream | 190016 | 8376521 ~ 8376813 (+) | True | G98169 |
| TU111754 | lncRNA | downstream | 34911 | 8604598 ~ 8604812 (+) | True | G98220 |
| TU111755 | lncRNA | downstream | 35536 | 8605223 ~ 8605440 (+) | True | G98221 |
| TU111756 | lncRNA | downstream | 37715 | 8607402 ~ 8607866 (+) | True | G98222 |
| TU111757 | lncRNA | downstream | 43277 | 8612964 ~ 8613740 (+) | True | G98223 |
| TU111759 | lncRNA | downstream | 48849 | 8618536 ~ 8618854 (+) | True | G98225 |
| CI01000016_08553934_08565167.mRNA | mRNA | upstream | 1583 | 8552843 ~ 8565246 (+) | True | CI01000016_08553934_08565167 |
| CI01000016_08513514_08545976.mRNA | mRNA | upstream | 20692 | 8513514 ~ 8546137 (+) | True | CI01000016_08513514_08545976 |
| CI01000016_08450823_08453343.mRNA | mRNA | upstream | 113452 | 8450628 ~ 8453377 (+) | True | CI01000016_08450823_08453343 |
| CI01000016_08390421_08396972.mRNA | mRNA | upstream | 169074 | 8390289 ~ 8397755 (+) | False | CI01000016_08390421_08396972 |
| CI01000016_08323079_08336573.mRNA | mRNA | upstream | 230142 | 8323079 ~ 8336687 (+) | True | CI01000016_08323079_08336573 |
| CI01000016_08628196_08630801.mRNA | mRNA | downstream | 58509 | 8628196 ~ 8631378 (+) | True | CI01000016_08628196_08630801 |
| CI01000016_08675783_08684401.mRNA | mRNA | downstream | 103724 | 8673411 ~ 8684506 (+) | True | CI01000016_08675783_08684401 |
| CI01000016_08696516_08734418.mRNA | mRNA | downstream | 126829 | 8696516 ~ 8734660 (+) | True | CI01000016_08696516_08734418 |
| CI01000016_08748359_08750572.mRNA | mRNA | downstream | 178672 | 8748359 ~ 8750736 (+) | True | CI01000016_08748359_08750572 |
| CI01000016_08752386_08753821.mRNA | mRNA | downstream | 182699 | 8752386 ~ 8753821 (+) | True | CI01000016_08752386_08753821 |
| TU111320 | other | upstream | 551054 | 8014363 ~ 8015775 (+) | True | G97824 |
| TU111256 | other | upstream | 781106 | 7785226 ~ 7785723 (+) | True | G97766 |
| TU109637 | other | upstream | 1405539 | 7160641 ~ 7161290 (+) | True | G96389 |
| TU109033 | other | upstream | 3158966 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
| TU111822 | other | downstream | 426411 | 8996098 ~ 9002717 (+) | True | G98288 |
| TU112665 | other | downstream | 1225944 | 9795631 ~ 9795684 (+) | True | G99016 |
| TU112690 | other | downstream | 1354731 | 9924418 ~ 9925654 (+) | True | G99041 |
| TU113122 | other | downstream | 1664713 | 10234400 ~ 10236851 (+) | True | G99410 |
| TU113168 | other | downstream | 1724704 | 10294391 ~ 10298904 (+) | True | G99456 |
