RNA id: TU111757


Basic Information

Item Value
RNA id TU111757
length 208
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G98223
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8612964 ~ 8613740 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCCCCTTCCACTCACAGAACTTCTCAAAAGAGTACTCTTGGGTCTGCTCCGCCACCATAACAGAGCTAAATACTGCAGTCAATGATGATGCAACTTCCTTCAGCTTGTCCAAGCGTTCATTGATTGGCAGCTTGTCCACCTCTTGCAGGAAGTCGTCTAGAGCAGCTAAGAGAGCACCGCGGGCCTTATTCCTGCTGTTCACCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111756 lncRNA upstream 5098 8607402 ~ 8607866 (+) True G98222
TU111755 lncRNA upstream 7524 8605223 ~ 8605440 (+) True G98221
TU111754 lncRNA upstream 8152 8604598 ~ 8604812 (+) True G98220
TU111627 lncRNA upstream 43277 8566829 ~ 8569687 (+) True G98098
TU111729 lncRNA upstream 153893 8458828 ~ 8459071 (+) True G98195
TU111759 lncRNA downstream 4796 8618536 ~ 8618854 (+) True G98225
TU111636 lncRNA downstream 19183 8632923 ~ 8634430 (+) True G98106
TU111764 lncRNA downstream 28448 8642188 ~ 8642410 (+) True G98230
TU111765 lncRNA downstream 29021 8642761 ~ 8642978 (+) True G98231
TU111828 lncRNA downstream 42022 8655762 ~ 8656133 (+) True G98294
CI01000016_08553934_08565167.mRNA mRNA upstream 47718 8552843 ~ 8565246 (+) True CI01000016_08553934_08565167
CI01000016_08513514_08545976.mRNA mRNA upstream 66827 8513514 ~ 8546137 (+) True CI01000016_08513514_08545976
CI01000016_08450823_08453343.mRNA mRNA upstream 159587 8450628 ~ 8453377 (+) True CI01000016_08450823_08453343
CI01000016_08390421_08396972.mRNA mRNA upstream 215209 8390289 ~ 8397755 (+) False CI01000016_08390421_08396972
CI01000016_08323079_08336573.mRNA mRNA upstream 276277 8323079 ~ 8336687 (+) True CI01000016_08323079_08336573
CI01000016_08628196_08630801.mRNA mRNA downstream 14456 8628196 ~ 8631378 (+) True CI01000016_08628196_08630801
CI01000016_08675783_08684401.mRNA mRNA downstream 59671 8673411 ~ 8684506 (+) True CI01000016_08675783_08684401
CI01000016_08696516_08734418.mRNA mRNA downstream 82776 8696516 ~ 8734660 (+) True CI01000016_08696516_08734418
CI01000016_08748359_08750572.mRNA mRNA downstream 134619 8748359 ~ 8750736 (+) True CI01000016_08748359_08750572
CI01000016_08752386_08753821.mRNA mRNA downstream 138646 8752386 ~ 8753821 (+) True CI01000016_08752386_08753821
TU111320 other upstream 597189 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 827241 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1451674 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 3205101 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 382358 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 1181891 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1310678 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1620660 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1680651 10294391 ~ 10298904 (+) True G99456

Expression Profile