RNA id: TU112218


Basic Information

Item Value
RNA id TU112218
length 231
lncRNA type intronic
GC content 0.39
exon number 1
gene id G98612
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8616369 ~ 8616599 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCTTATTGAGTCTCTCCAACAGTGTGTGGCTTTAGCCACGTTAGCCGTGCATCACGCTATTAAAATCATTCAGAATCGAATTTTAGCAAACATCCACATAATACATGCCATACCTATGTTATATGCTGCATCAAGAACAGTTTAATGATTAATTTTGTGAGTTATATTTGCTGTGTGAGCTTCTGTATTATGTATGCCTCAGTGTATTGGAATGACGAGCGAGCTTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112214 lncRNA downstream 7479 8608563 ~ 8608890 (-) True G98608
TU112213 lncRNA downstream 7974 8608196 ~ 8608395 (-) True G98607
TU112209 lncRNA downstream 63934 8552161 ~ 8552435 (-) True G98603
TU112208 lncRNA downstream 67678 8548477 ~ 8548691 (-) True G98602
TU112206 lncRNA downstream 68902 8547157 ~ 8547467 (-) True G98600
TU112219 lncRNA upstream 645 8617244 ~ 8617464 (-) True G98613
TU112221 lncRNA upstream 3585 8620184 ~ 8620530 (-) True G98615
TU112236 lncRNA upstream 42322 8658921 ~ 8675499 (-) True G98628
TU112254 lncRNA upstream 74273 8690872 ~ 8714885 (-) False G98641
TU112255 lncRNA upstream 74273 8690872 ~ 8700746 (-) False G98641
CI01000016_08598259_08602660.mRNA mRNA downstream 13709 8598231 ~ 8602660 (-) True CI01000016_08598259_08602660
CI01000016_08570850_08582638.mRNA mRNA downstream 33462 8570293 ~ 8582907 (-) True CI01000016_08570850_08582638
CI01000016_08421119_08444481.mRNA mRNA downstream 171267 8421097 ~ 8445102 (-) True CI01000016_08421119_08444481
CI01000016_08385655_08387187.mRNA mRNA downstream 228708 8385576 ~ 8387661 (-) True CI01000016_08385655_08387187
CI01000016_08379971_08382899.mRNA mRNA downstream 232333 8379283 ~ 8384036 (-) True CI01000016_08379971_08382899
CI01000016_08642218_08643021.mRNA mRNA upstream 24842 8641441 ~ 8643021 (-) True CI01000016_08642218_08643021
CI01000016_08741387_08746007.mRNA mRNA upstream 124383 8740982 ~ 8746066 (-) False CI01000016_08741387_08746007
CI01000016_08769141_08795202.mRNA mRNA upstream 152223 8768822 ~ 8795559 (-) True CI01000016_08769141_08795202
CI01000016_08800360_08805384.mRNA mRNA upstream 181808 8798407 ~ 8805384 (-) True CI01000016_08800360_08805384
CI01000016_08833925_08836497.mRNA mRNA upstream 216891 8833490 ~ 8836497 (-) True CI01000016_08833925_08836497
TU110786 other downstream 2456648 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3198152 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 3285523 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 3692965 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 4685318 3865761 ~ 3890326 (-) True G96690
TU112287 other upstream 272234 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 320190 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 618397 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 639503 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 893023 9511357 ~ 9511415 (-) False G98896

Expression Profile