RNA id: TU111828


Basic Information

Item Value
RNA id TU111828
length 372
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G98294
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8655762 ~ 8656133 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGTCTTACCCCATTTTGCGACATGGCTGCAATTGTTCATGCTAGGAAAAGACACTGGAGAGAAGCGCGTGGTAGAAGGGAGAAAATATTTTCCACTCGTATTAATGTCTTTGGAATGCCAGAGGAAGATGTTATCCGTATATTACATGTAACAAGTTGCGTCTGTGTCGACCCGCACCTGATGAGCATCAGCTCTGCTTATTTGCGACCCAACGCTAATTTGCACTGCTCTTAGTAGATTGTGTTGGTCATTATGTAAATGATTTGACTGCGTCTGTGTTCTTTAATTTGCGCGTCAGCAGTAGATCACACGCAAAACTTGTCACTCCCATCGGCGCATTTGTGGAATTGCGCTCTCACGCTAATTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111765 lncRNA upstream 12784 8642761 ~ 8642978 (+) True G98231
TU111764 lncRNA upstream 13352 8642188 ~ 8642410 (+) True G98230
TU111636 lncRNA upstream 21332 8632923 ~ 8634430 (+) True G98106
TU111759 lncRNA upstream 36908 8618536 ~ 8618854 (+) True G98225
TU111757 lncRNA upstream 42022 8612964 ~ 8613740 (+) True G98223
TU111842 lncRNA downstream 15625 8671758 ~ 8689219 (+) True G98307
TU111850 lncRNA downstream 106580 8762713 ~ 8762969 (+) True G98315
TU111855 lncRNA downstream 122410 8778543 ~ 8778763 (+) True G98320
TU111856 lncRNA downstream 124434 8780567 ~ 8780906 (+) True G98321
TU111790 lncRNA downstream 127480 8783613 ~ 8800681 (+) True G98256
CI01000016_08628196_08630801.mRNA mRNA upstream 24384 8628196 ~ 8631378 (+) True CI01000016_08628196_08630801
CI01000016_08553934_08565167.mRNA mRNA upstream 90516 8552843 ~ 8565246 (+) True CI01000016_08553934_08565167
CI01000016_08513514_08545976.mRNA mRNA upstream 109625 8513514 ~ 8546137 (+) True CI01000016_08513514_08545976
CI01000016_08450823_08453343.mRNA mRNA upstream 202385 8450628 ~ 8453377 (+) True CI01000016_08450823_08453343
CI01000016_08390421_08396972.mRNA mRNA upstream 258007 8390289 ~ 8397755 (+) False CI01000016_08390421_08396972
CI01000016_08675783_08684401.mRNA mRNA downstream 17278 8673411 ~ 8684506 (+) True CI01000016_08675783_08684401
CI01000016_08696516_08734418.mRNA mRNA downstream 40383 8696516 ~ 8734660 (+) True CI01000016_08696516_08734418
CI01000016_08748359_08750572.mRNA mRNA downstream 92226 8748359 ~ 8750736 (+) True CI01000016_08748359_08750572
CI01000016_08752386_08753821.mRNA mRNA downstream 96253 8752386 ~ 8753821 (+) True CI01000016_08752386_08753821
CI01000016_08766170_08768621.mRNA mRNA downstream 110037 8766170 ~ 8768778 (+) True CI01000016_08766170_08768621
TU111320 other upstream 639987 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 870039 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1494472 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 3247899 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 339965 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 1139498 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1268285 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1578267 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1638258 10294391 ~ 10298904 (+) True G99456

Expression Profile