RNA id: TU112258


Basic Information

Item Value
RNA id TU112258
length 696
lncRNA type antisense_over
GC content 0.50
exon number 3
gene id G98641
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8690872 ~ 8715924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTAACCACAAACACACCCTGAAGAGCAGGATACAGGGTGAAAAATCTCAGTGTCTCAGTCATGCCTGGGGTTTCACACTGTTACTAAGTGTGTGAAAGATCTGAAACTTCCTGTAGCAACATGAAACTGGTTCCTTCTTTATAATATTTTGACGCAGAGGTGTATGAATAAATTCACATAAACTGAAGCAGCCTACAGTAGGTTAGCTGGTTGCCATGGTACCTTGCAGCATGCTCCTGTAGGCCGCCTCCGATATGGCGTAGATATGTGGAGGCATCTCATGCCGTTTCTTCCCACGATACATCTCTATGATGGATTCTGTGTAGATGGGCAGGTTCTTATAGGGGTTGATCACCACACAAAACAGGCCGGAGTATGTATATATGAGTCCTGAATAGTATCTCTCTCGTAGATTGTGTAAGACAGAGGCCTCATTGAGGCATGTGAGATCGGCCATGTCTTCAACTTTACTGAATCGAGGTGGGTTCATCCGCTGGAGCTCCTCCCTCGAAAGCGTCATTTTCTTCCCACTGTCAGTAAGCTCCACGTCCACCTCGTCGCCCCGCTCCTCGCGCACACTTTGGCTGGAGGCGGAGAACTTTGAGGTTGGTGACCCAGGCCCCGCCCCCGTGGCCAGGAAGCGGGTGACATCATTAGCACTGCCCCCCGCTGGCCTGGACATGGTTGTAGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112236 lncRNA downstream 21015 8658921 ~ 8675499 (-) True G98628
TU112221 lncRNA downstream 75984 8620184 ~ 8620530 (-) True G98615
TU112219 lncRNA downstream 79050 8617244 ~ 8617464 (-) True G98613
TU112218 lncRNA downstream 79915 8616369 ~ 8616599 (-) True G98612
TU112214 lncRNA downstream 87624 8608563 ~ 8608890 (-) True G98608
TU112256 lncRNA upstream 5432 8709012 ~ 8715924 (-) True G98641
TU112238 lncRNA upstream 30496 8734076 ~ 8738396 (-) True G98630
TU112324 lncRNA upstream 40087 8744594 ~ 8744667 (-) True G98704
TU112277 lncRNA upstream 50139 8753719 ~ 8758625 (-) True G98660
TU112330 lncRNA upstream 61550 8765130 ~ 8765458 (-) True G98710
CI01000016_08642218_08643021.mRNA mRNA downstream 53493 8641441 ~ 8643021 (-) True CI01000016_08642218_08643021
CI01000016_08605369_08623062.mRNA mRNA downstream 73452 8605247 ~ 8623062 (-) True CI01000016_08605369_08623062
CI01000016_08598259_08602660.mRNA mRNA downstream 93854 8598231 ~ 8602660 (-) True CI01000016_08598259_08602660
CI01000016_08570850_08582638.mRNA mRNA downstream 113607 8570293 ~ 8582907 (-) True CI01000016_08570850_08582638
CI01000016_08421119_08444481.mRNA mRNA downstream 251412 8421097 ~ 8445102 (-) True CI01000016_08421119_08444481
CI01000016_08741387_08746007.mRNA mRNA upstream 37402 8740982 ~ 8746066 (-) False CI01000016_08741387_08746007
CI01000016_08769141_08795202.mRNA mRNA upstream 65242 8768822 ~ 8795559 (-) True CI01000016_08769141_08795202
CI01000016_08800360_08805384.mRNA mRNA upstream 94827 8798407 ~ 8805384 (-) True CI01000016_08800360_08805384
CI01000016_08833925_08836497.mRNA mRNA upstream 129910 8833490 ~ 8836497 (-) True CI01000016_08833925_08836497
CI01000016_08851218_08869647.mRNA mRNA upstream 147292 8850872 ~ 8869647 (-) True CI01000016_08851218_08869647
TU110786 other downstream 2536793 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3278297 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 3365668 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 3773110 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 4765463 3865761 ~ 3890326 (-) True G96690
TU112287 other upstream 185253 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 233209 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 531416 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 552522 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 806042 9511357 ~ 9511415 (-) False G98896

Expression Profile