RNA id: TU111850


Basic Information

Item Value
RNA id TU111850
length 257
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G98315
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8762713 ~ 8762969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAACAATGCTGTAAAAAATGAAAAACAAATGTATTTGGACACTTTCTGTTTGTCAAATGTTAGTGGAACATGTCTATAGTTAATGTGATGATTTACACCTGTGAAAACTTCACACATTTACGAAAAACACAGAGAAAAAAAAAGTTAGTTCTGAGAAAAGCATAATTTGTTCGCAGAAGTCCCTTGGTTTGAAACTTTGTATCTCGTTCATTAAAATTCAGTTAATTCATTGCATGTCCAAATACTTCTTGGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111842 lncRNA upstream 73494 8671758 ~ 8689219 (+) True G98307
TU111828 lncRNA upstream 106580 8655762 ~ 8656133 (+) True G98294
TU111765 lncRNA upstream 119735 8642761 ~ 8642978 (+) True G98231
TU111764 lncRNA upstream 120303 8642188 ~ 8642410 (+) True G98230
TU111636 lncRNA upstream 128283 8632923 ~ 8634430 (+) True G98106
TU111855 lncRNA downstream 15574 8778543 ~ 8778763 (+) True G98320
TU111856 lncRNA downstream 17598 8780567 ~ 8780906 (+) True G98321
TU111790 lncRNA downstream 20644 8783613 ~ 8800681 (+) True G98256
TU111852 lncRNA downstream 52667 8815636 ~ 8816240 (+) True G98317
TU111853 lncRNA downstream 53445 8816414 ~ 8816982 (+) True G98318
CI01000016_08752386_08753821.mRNA mRNA upstream 8892 8752386 ~ 8753821 (+) True CI01000016_08752386_08753821
CI01000016_08748359_08750572.mRNA mRNA upstream 11977 8748359 ~ 8750736 (+) True CI01000016_08748359_08750572
CI01000016_08696516_08734418.mRNA mRNA upstream 28053 8696516 ~ 8734660 (+) True CI01000016_08696516_08734418
CI01000016_08675783_08684401.mRNA mRNA upstream 78207 8673411 ~ 8684506 (+) True CI01000016_08675783_08684401
CI01000016_08628196_08630801.mRNA mRNA upstream 131335 8628196 ~ 8631378 (+) True CI01000016_08628196_08630801
CI01000016_08766170_08768621.mRNA mRNA downstream 3201 8766170 ~ 8768778 (+) True CI01000016_08766170_08768621
CI01000016_08817749_08824067.mRNA mRNA downstream 54780 8817749 ~ 8824078 (+) True CI01000016_08817749_08824067
CI01000016_08916022_08916606.mRNA mRNA downstream 152059 8915028 ~ 8916667 (+) True CI01000016_08916022_08916606
CI01000016_09026732_09050431.mRNA mRNA downstream 263763 9026732 ~ 9050838 (+) True CI01000016_09026732_09050431
CI01000016_09138227_09156795.mRNA mRNA downstream 374465 9137434 ~ 9157472 (+) True CI01000016_09138227_09156795
TU111320 other upstream 746938 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 976990 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1601423 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 3354850 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 233129 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 1032662 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1161449 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1471431 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1531422 10294391 ~ 10298904 (+) True G99456

Expression Profile