RNA id: TU111856


Basic Information

Item Value
RNA id TU111856
length 340
lncRNA type intronic
GC content 0.36
exon number 1
gene id G98321
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8780567 ~ 8780906 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTATGAGTAAAATATCTCTGAAGTATATTTCCATTCATATTTCCATTTTTTAGCACACCAGGGTGATCATGAACATGAAATTGTCCAGCCATGACTTCCTGTTCCACAGGAGTATAAACATGAGGAAACACAAAGGCCAAATTCCCTTAATCATTCATCACAATGAGTAAAACCAAAGAATATAGTTCTGATGTGCAGCAAAAGATTGTTGAGCTTCACAAAATAGAAAGTGGCTGTAAGAAAATAGCTGAAGCATTGAAAATCCCCATTTCCACTATCAGGGCAATAATTAAGAAGTTCCAATCAACTAAAGATGTTACAAATCTGCCTGGAAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111855 lncRNA upstream 1804 8778543 ~ 8778763 (+) True G98320
TU111850 lncRNA upstream 17598 8762713 ~ 8762969 (+) True G98315
TU111842 lncRNA upstream 91348 8671758 ~ 8689219 (+) True G98307
TU111828 lncRNA upstream 124434 8655762 ~ 8656133 (+) True G98294
TU111765 lncRNA upstream 137589 8642761 ~ 8642978 (+) True G98231
TU111790 lncRNA downstream 2707 8783613 ~ 8800681 (+) True G98256
TU111852 lncRNA downstream 34730 8815636 ~ 8816240 (+) True G98317
TU111853 lncRNA downstream 35508 8816414 ~ 8816982 (+) True G98318
TU111861 lncRNA downstream 64748 8845654 ~ 8847124 (+) True G98326
TU111775 lncRNA downstream 100103 8881009 ~ 8912783 (+) True G98241
CI01000016_08766170_08768621.mRNA mRNA upstream 11789 8766170 ~ 8768778 (+) True CI01000016_08766170_08768621
CI01000016_08752386_08753821.mRNA mRNA upstream 26746 8752386 ~ 8753821 (+) True CI01000016_08752386_08753821
CI01000016_08748359_08750572.mRNA mRNA upstream 29831 8748359 ~ 8750736 (+) True CI01000016_08748359_08750572
CI01000016_08696516_08734418.mRNA mRNA upstream 45907 8696516 ~ 8734660 (+) True CI01000016_08696516_08734418
CI01000016_08675783_08684401.mRNA mRNA upstream 96061 8673411 ~ 8684506 (+) True CI01000016_08675783_08684401
CI01000016_08817749_08824067.mRNA mRNA downstream 36843 8817749 ~ 8824078 (+) True CI01000016_08817749_08824067
CI01000016_08916022_08916606.mRNA mRNA downstream 134122 8915028 ~ 8916667 (+) True CI01000016_08916022_08916606
CI01000016_09026732_09050431.mRNA mRNA downstream 245826 9026732 ~ 9050838 (+) True CI01000016_09026732_09050431
CI01000016_09138227_09156795.mRNA mRNA downstream 356528 9137434 ~ 9157472 (+) True CI01000016_09138227_09156795
CI01000016_09181426_09182326.mRNA mRNA downstream 400520 9181426 ~ 9182326 (+) True CI01000016_09181426_09182326
TU111320 other upstream 764792 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 994844 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1619277 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 3372704 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 215192 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 1014725 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1143512 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1453494 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1513485 10294391 ~ 10298904 (+) True G99456

Expression Profile