Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU111823 |
| length | 877 |
| lncRNA type | antisense_over |
| GC content | 0.45 |
| exon number | 3 |
| gene id | G98289 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 8943217 ~ 8945455 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU111775 | lncRNA | upstream | 30434 | 8881009 ~ 8912783 (+) | True | G98241 |
| TU111806 | lncRNA | upstream | 48423 | 8889842 ~ 8894794 (+) | True | G98272 |
| TU111861 | lncRNA | upstream | 96093 | 8845654 ~ 8847124 (+) | True | G98326 |
| TU111853 | lncRNA | upstream | 126235 | 8816414 ~ 8816982 (+) | True | G98318 |
| TU111852 | lncRNA | upstream | 126977 | 8815636 ~ 8816240 (+) | True | G98317 |
| TU111895 | lncRNA | downstream | 32777 | 8978232 ~ 8978540 (+) | True | G98356 |
| TU111901 | lncRNA | downstream | 43783 | 8989238 ~ 8989461 (+) | True | G98362 |
| TU111914 | lncRNA | downstream | 139773 | 9085228 ~ 9098103 (+) | True | G98375 |
| TU111929 | lncRNA | downstream | 180264 | 9125719 ~ 9125931 (+) | True | G98385 |
| TU111939 | lncRNA | downstream | 229744 | 9175199 ~ 9175960 (+) | False | G98391 |
| CI01000016_08916022_08916606.mRNA | mRNA | upstream | 26550 | 8915028 ~ 8916667 (+) | True | CI01000016_08916022_08916606 |
| CI01000016_08817749_08824067.mRNA | mRNA | upstream | 119139 | 8817749 ~ 8824078 (+) | True | CI01000016_08817749_08824067 |
| CI01000016_08766170_08768621.mRNA | mRNA | upstream | 174439 | 8766170 ~ 8768778 (+) | True | CI01000016_08766170_08768621 |
| CI01000016_08752386_08753821.mRNA | mRNA | upstream | 189396 | 8752386 ~ 8753821 (+) | True | CI01000016_08752386_08753821 |
| CI01000016_08748359_08750572.mRNA | mRNA | upstream | 192481 | 8748359 ~ 8750736 (+) | True | CI01000016_08748359_08750572 |
| CI01000016_09026732_09050431.mRNA | mRNA | downstream | 81277 | 9026732 ~ 9050838 (+) | True | CI01000016_09026732_09050431 |
| CI01000016_09138227_09156795.mRNA | mRNA | downstream | 191979 | 9137434 ~ 9157472 (+) | True | CI01000016_09138227_09156795 |
| CI01000016_09181426_09182326.mRNA | mRNA | downstream | 235971 | 9181426 ~ 9182326 (+) | True | CI01000016_09181426_09182326 |
| CI01000016_09183871_09184200.mRNA | mRNA | downstream | 237921 | 9183376 ~ 9184427 (+) | True | CI01000016_09183871_09184200 |
| CI01000016_09228083_09231481.mRNA | mRNA | downstream | 282628 | 9228083 ~ 9231635 (+) | True | CI01000016_09228083_09231481 |
| TU111320 | other | upstream | 927442 | 8014363 ~ 8015775 (+) | True | G97824 |
| TU111256 | other | upstream | 1157494 | 7785226 ~ 7785723 (+) | True | G97766 |
| TU109637 | other | upstream | 1781927 | 7160641 ~ 7161290 (+) | True | G96389 |
| TU109033 | other | upstream | 3535354 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
| TU111822 | other | downstream | 50643 | 8996098 ~ 9002717 (+) | True | G98288 |
| TU112665 | other | downstream | 850176 | 9795631 ~ 9795684 (+) | True | G99016 |
| TU112690 | other | downstream | 978963 | 9924418 ~ 9925654 (+) | True | G99041 |
| TU113122 | other | downstream | 1288945 | 10234400 ~ 10236851 (+) | True | G99410 |
| TU113168 | other | downstream | 1348936 | 10294391 ~ 10298904 (+) | True | G99456 |
