RNA id: TU111901


Basic Information

Item Value
RNA id TU111901
length 224
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G98362
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8989238 ~ 8989461 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATAAAGTCATTATTATGTTTTTTTTGGTGCACAAAAATTATTCTCGTCGCTTCATAACATTAAGGTTTAACCACTGTAGTCACATGAACTGTTTTAAATATGGGCATCTTTCTGGGCACACTCTGAAAGTGTTAATTATCTTGCTGTCAATAGAGGCCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111895 lncRNA upstream 10698 8978232 ~ 8978540 (+) True G98356
TU111823 lncRNA upstream 43783 8943217 ~ 8945455 (+) True G98289
TU111775 lncRNA upstream 76455 8881009 ~ 8912783 (+) True G98241
TU111806 lncRNA upstream 94444 8889842 ~ 8894794 (+) True G98272
TU111861 lncRNA upstream 142114 8845654 ~ 8847124 (+) True G98326
TU111914 lncRNA downstream 95767 9085228 ~ 9098103 (+) True G98375
TU111929 lncRNA downstream 136258 9125719 ~ 9125931 (+) True G98385
TU111939 lncRNA downstream 185738 9175199 ~ 9175960 (+) False G98391
TU111936 lncRNA downstream 185971 9175432 ~ 9175960 (+) False G98391
TU111937 lncRNA downstream 185971 9175432 ~ 9175912 (+) True G98391
CI01000016_08916022_08916606.mRNA mRNA upstream 72571 8915028 ~ 8916667 (+) True CI01000016_08916022_08916606
CI01000016_08817749_08824067.mRNA mRNA upstream 165160 8817749 ~ 8824078 (+) True CI01000016_08817749_08824067
CI01000016_08766170_08768621.mRNA mRNA upstream 220460 8766170 ~ 8768778 (+) True CI01000016_08766170_08768621
CI01000016_08752386_08753821.mRNA mRNA upstream 235417 8752386 ~ 8753821 (+) True CI01000016_08752386_08753821
CI01000016_08748359_08750572.mRNA mRNA upstream 238502 8748359 ~ 8750736 (+) True CI01000016_08748359_08750572
CI01000016_09026732_09050431.mRNA mRNA downstream 37271 9026732 ~ 9050838 (+) True CI01000016_09026732_09050431
CI01000016_09138227_09156795.mRNA mRNA downstream 147973 9137434 ~ 9157472 (+) True CI01000016_09138227_09156795
CI01000016_09181426_09182326.mRNA mRNA downstream 191965 9181426 ~ 9182326 (+) True CI01000016_09181426_09182326
CI01000016_09183871_09184200.mRNA mRNA downstream 193915 9183376 ~ 9184427 (+) True CI01000016_09183871_09184200
CI01000016_09228083_09231481.mRNA mRNA downstream 238622 9228083 ~ 9231635 (+) True CI01000016_09228083_09231481
TU111320 other upstream 973463 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 1203515 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1827948 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 3581375 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 6637 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 806170 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 934957 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1244939 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1304930 10294391 ~ 10298904 (+) True G99456

Expression Profile