RNA id: TU111914


Basic Information

Item Value
RNA id TU111914
length 384
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G98375
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9085228 ~ 9098103 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCTGGCATTTGGAATAGGGCCGTGGCTTCTTTATAGACGAGGAGGGGCTTAAACCTGGTGTCATGGGCCCCACATCCAGGCTGGCATGATGTGCTCGGCCATGGCCTCTCCTGGTTGCCTTGGCATTGCCGGCATGCCTCTTCCGTTGCCTTTCAGTCAACAGACGTGTGGCCTCCCGTCTGGCAACATTACCCAGCTGCTCCCGATATTCCCCATATAGCAGGGTTTGCTGGTATCTCAGAGCTTTCCTTTGCGACGCATCGGCAGCCATCGACACGCTCGCACTGAGCCAAAAATAAACACACACAGTCTCACTCCTGTGTTACAGCATATGAAACACATACACTGACCGACTCTTACCCGTTTATTCAGTTACACACACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111901 lncRNA upstream 95767 8989238 ~ 8989461 (+) True G98362
TU111895 lncRNA upstream 106688 8978232 ~ 8978540 (+) True G98356
TU111823 lncRNA upstream 139773 8943217 ~ 8945455 (+) True G98289
TU111775 lncRNA upstream 172445 8881009 ~ 8912783 (+) True G98241
TU111806 lncRNA upstream 190434 8889842 ~ 8894794 (+) True G98272
TU111929 lncRNA downstream 27616 9125719 ~ 9125931 (+) True G98385
TU111939 lncRNA downstream 77096 9175199 ~ 9175960 (+) False G98391
TU111936 lncRNA downstream 77329 9175432 ~ 9175960 (+) False G98391
TU111937 lncRNA downstream 77329 9175432 ~ 9175912 (+) True G98391
TU111940 lncRNA downstream 113247 9211350 ~ 9211766 (+) True G98392
CI01000016_09026732_09050431.mRNA mRNA upstream 34390 9026732 ~ 9050838 (+) True CI01000016_09026732_09050431
CI01000016_08916022_08916606.mRNA mRNA upstream 168561 8915028 ~ 8916667 (+) True CI01000016_08916022_08916606
CI01000016_08817749_08824067.mRNA mRNA upstream 261150 8817749 ~ 8824078 (+) True CI01000016_08817749_08824067
CI01000016_08766170_08768621.mRNA mRNA upstream 316450 8766170 ~ 8768778 (+) True CI01000016_08766170_08768621
CI01000016_08752386_08753821.mRNA mRNA upstream 331407 8752386 ~ 8753821 (+) True CI01000016_08752386_08753821
CI01000016_09138227_09156795.mRNA mRNA downstream 39331 9137434 ~ 9157472 (+) True CI01000016_09138227_09156795
CI01000016_09181426_09182326.mRNA mRNA downstream 83323 9181426 ~ 9182326 (+) True CI01000016_09181426_09182326
CI01000016_09183871_09184200.mRNA mRNA downstream 85273 9183376 ~ 9184427 (+) True CI01000016_09183871_09184200
CI01000016_09228083_09231481.mRNA mRNA downstream 129980 9228083 ~ 9231635 (+) True CI01000016_09228083_09231481
CI01000016_09240403_09243601.mRNA mRNA downstream 141642 9239745 ~ 9243601 (+) True CI01000016_09240403_09243601
TU111822 other upstream 82511 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1069453 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 1299505 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1923938 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 3677365 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU112665 other downstream 697528 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 826315 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1136297 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1196288 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 2573542 11671645 ~ 11672873 (+) True G99940

Expression Profile