RNA id: TU111940


Basic Information

Item Value
RNA id TU111940
length 417
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G98392
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9211350 ~ 9211766 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGATTCATAACGCCTCCAGTAGCTTCATGAAGCAGTGTTTTGAAATCGGCCATCACTATATAAGTCGTTATTTTGTTTTTTTGGCGCACCAAAAATATTCTCGTCACTTTATAATATTAATATTGAACCACTGTACTCGCATGAACTGATTTAAATATGTTTTTAGTACATTTATGGATTTTGAGAGAGGAAGTGTCATTGCTGGCTATGCAGGCCTCACTGAGCCATCGGATTTCAACAAAAATATCTTAATTTGCATTCCGAAGATGAATGAAGGTCTTACGGGTGTGGAACGGCATGAGGGTGAGTAATAAATTACATTATTTTCATTTTTGGGTGAACTAACCCTTTAAGTTCCAGGCATAAAACCTAAAATGTTTTTATAACCACAGCTGTCATTTTTGCTATAACCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111939 lncRNA upstream 35390 9175199 ~ 9175960 (+) False G98391
TU111936 lncRNA upstream 35390 9175432 ~ 9175960 (+) False G98391
TU111937 lncRNA upstream 35438 9175432 ~ 9175912 (+) True G98391
TU111929 lncRNA upstream 85419 9125719 ~ 9125931 (+) True G98385
TU111914 lncRNA upstream 113247 9085228 ~ 9098103 (+) True G98375
TU111814 lncRNA downstream 12683 9224449 ~ 9226908 (+) True G98280
TU111824 lncRNA downstream 114608 9326374 ~ 9375553 (+) True G98290
TU111805 lncRNA downstream 164451 9376217 ~ 9378050 (+) True G98271
TU111962 lncRNA downstream 188189 9399955 ~ 9402046 (+) True G98409
TU111970 lncRNA downstream 192101 9403867 ~ 9404218 (+) True G98414
CI01000016_09183871_09184200.mRNA mRNA upstream 26923 9183376 ~ 9184427 (+) True CI01000016_09183871_09184200
CI01000016_09181426_09182326.mRNA mRNA upstream 29024 9181426 ~ 9182326 (+) True CI01000016_09181426_09182326
CI01000016_09138227_09156795.mRNA mRNA upstream 53878 9137434 ~ 9157472 (+) True CI01000016_09138227_09156795
CI01000016_09026732_09050431.mRNA mRNA upstream 160512 9026732 ~ 9050838 (+) True CI01000016_09026732_09050431
CI01000016_08916022_08916606.mRNA mRNA upstream 294683 8915028 ~ 8916667 (+) True CI01000016_08916022_08916606
CI01000016_09228083_09231481.mRNA mRNA downstream 16317 9228083 ~ 9231635 (+) True CI01000016_09228083_09231481
CI01000016_09240403_09243601.mRNA mRNA downstream 27979 9239745 ~ 9243601 (+) True CI01000016_09240403_09243601
CI01000016_09259876_09260073.mRNA mRNA downstream 47875 9259641 ~ 9260201 (+) True CI01000016_09259876_09260073
CI01000016_09266373_09278553.mRNA mRNA downstream 53799 9265565 ~ 9279131 (+) True CI01000016_09266373_09278553
CI01000016_09299769_09306497.mRNA mRNA downstream 88003 9299769 ~ 9307385 (+) True CI01000016_09299769_09306497
TU111822 other upstream 208633 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1195575 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 1425627 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2050060 7160641 ~ 7161290 (+) True G96389
TU109031 other upstream 3803487 5406748 ~ 5406829 (+) True G95870
TU112665 other downstream 583865 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 712652 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1022634 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1082625 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 2459879 11671645 ~ 11672873 (+) True G99940

Expression Profile