RNA id: TU112309


Basic Information

Item Value
RNA id TU112309
length 378
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G98692
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9254951 ~ 9255328 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTCATTCTGAAGTAAACTAATCCTTTAAATACTTCACTGACACTACACTTAAATTCCTCTAGAGGGCACACATGTAGAAGCAGTAACAGATTATCTGAAGGTTTGCACGTCCTGAGTTTGCAGAGTTAGATGTGTTCCTGTGTTAACATATTTGGTTGGTCCTGGAACAACATTCCTGTCCAAAAATTGAATCCTAACCATATCCCTACCCCTAAACCTAACCCAACCCATAAGTTATCCCTAAAATCAGAGAGAAATGATAGATGAATAACACTGATGTTGAAGCACCTAACCCTGGTTGTAAGCCTAAATTTGACATAAACTGTAAACTTGTCCCTCAAATCTGATTGGTTGATTGGAATGTTGTATGATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112300 lncRNA downstream 20518 9233904 ~ 9234433 (-) True G98683
TU112403 lncRNA downstream 79034 9175431 ~ 9175917 (-) False G98783
TU112404 lncRNA downstream 79034 9175536 ~ 9175917 (-) False G98783
TU112408 lncRNA downstream 79072 9175182 ~ 9175879 (-) False G98783
TU112405 lncRNA downstream 79072 9175431 ~ 9175879 (-) False G98783
TU112414 lncRNA upstream 307 9255635 ~ 9255882 (-) True G98789
TU112465 lncRNA upstream 55663 9310991 ~ 9311210 (-) True G98831
TU112468 lncRNA upstream 58247 9313575 ~ 9314005 (-) True G98834
TU112429 lncRNA upstream 62243 9317571 ~ 9320209 (-) False G98802
TU112430 lncRNA upstream 67524 9322852 ~ 9324495 (-) True G98802
CI01000016_09251602_09253351.mRNA mRNA downstream 1600 9251412 ~ 9253351 (-) True CI01000016_09251602_09253351
CI01000016_09224593_09226660.mRNA mRNA downstream 28291 9224467 ~ 9226660 (-) True CI01000016_09224593_09226660
CI01000016_09212039_09212358.mRNA mRNA downstream 41781 9211997 ~ 9213170 (-) True CI01000016_09212039_09212358
CI01000016_09185530_09205841.mRNA mRNA downstream 48917 9185404 ~ 9206034 (-) True CI01000016_09185530_09205841
CI01000016_09164404_09171973.mRNA mRNA downstream 80193 9164404 ~ 9174758 (-) True CI01000016_09164404_09171973
CI01000016_09376209_09382250.mRNA mRNA upstream 120881 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09384358_09401878.mRNA mRNA upstream 128834 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09410080_09416286.mRNA mRNA upstream 154578 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09475913_09487996.mRNA mRNA upstream 219669 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09510177_09512196.mRNA mRNA upstream 254331 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
TU112296 other downstream 15022 9234996 ~ 9239929 (-) True G98679
TU112294 other downstream 309722 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 360214 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 3095230 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3836734 5415682 ~ 5418217 (-) True G97020
TU112308 other upstream 774 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 254294 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 254323 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 254323 9511357 ~ 9511415 (-) True G98896
TU112845 other upstream 559033 9814361 ~ 9814955 (-) True G99178

Expression Profile