RNA id: TU112414


Basic Information

Item Value
RNA id TU112414
length 248
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G98789
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9255635 ~ 9255882 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGAAAGAGCTGTCATTTTCTTAAAAAAAAAAAAAAAAAAATTTCGGGAAAAAAAAAATCAGTGAAAAATGTATATACTTTTTAACCACAAATGCTCATCTTGCACTGCTCTGCGATCCACCGCGCACGATGTAATCACGTTAGAAAGGTCACGTGTGAAGTGGGTGAAAGTACAGATGCAGTGTCTAGAAAGTGACCGTGCAAAGATTAAGCTAAACAGCCTTTACAAAAAAAAAAAAAAAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112309 lncRNA downstream 307 9254951 ~ 9255328 (-) True G98692
TU112300 lncRNA downstream 21202 9233904 ~ 9234433 (-) True G98683
TU112403 lncRNA downstream 79718 9175431 ~ 9175917 (-) False G98783
TU112465 lncRNA upstream 55109 9310991 ~ 9311210 (-) True G98831
TU112468 lncRNA upstream 57693 9313575 ~ 9314005 (-) True G98834
TU112429 lncRNA upstream 61689 9317571 ~ 9320209 (-) False G98802
TU112430 lncRNA upstream 66970 9322852 ~ 9324495 (-) True G98802
TU112442 lncRNA upstream 69285 9325167 ~ 9325698 (-) True G98809
CI01000016_09251602_09253351.mRNA mRNA downstream 2284 9251412 ~ 9253351 (-) True CI01000016_09251602_09253351
CI01000016_09224593_09226660.mRNA mRNA downstream 28975 9224467 ~ 9226660 (-) True CI01000016_09224593_09226660
CI01000016_09212039_09212358.mRNA mRNA downstream 42465 9211997 ~ 9213170 (-) True CI01000016_09212039_09212358
CI01000016_09185530_09205841.mRNA mRNA downstream 49601 9185404 ~ 9206034 (-) True CI01000016_09185530_09205841
CI01000016_09164404_09171973.mRNA mRNA downstream 80877 9164404 ~ 9174758 (-) True CI01000016_09164404_09171973
CI01000016_09376209_09382250.mRNA mRNA upstream 120327 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09384358_09401878.mRNA mRNA upstream 128280 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09410080_09416286.mRNA mRNA upstream 154024 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09475913_09487996.mRNA mRNA upstream 219115 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09510177_09512196.mRNA mRNA upstream 253777 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
TU112296 other downstream 15706 9234996 ~ 9239929 (-) True G98679
TU112294 other downstream 310406 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 360898 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 3095914 6158986 ~ 6159721 (-) True G97341
TU110396 other downstream 3837418 5415682 ~ 5418217 (-) True G97020
TU112308 other upstream 220 9256102 ~ 9257611 (-) True G98691
TU112534 other upstream 253740 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 253769 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 253769 9511357 ~ 9511415 (-) True G98896
TU112845 other upstream 558479 9814361 ~ 9814955 (-) True G99178

Expression Profile