RNA id: TU112472


Basic Information

Item Value
RNA id TU112472
length 355
lncRNA type intronic
GC content 0.20
exon number 1
gene id G98838
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9325886 ~ 9326240 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTACTATTGTTATTTTATCATTATTATTATTTTTATTACTGTTATTATTATTGATTTTACTGTTGCCGTCATCACAAAATATTAGAATCATCACCATCTTTAGTACTGCTATTGTTATTATTATTATTATTAATATTATATTATTATTGATATTACTGTTGCCGTCATAAAATATTATCACCATCTTTAGTATTAGTATTACTATTGATATTATTATTATTATTATTGATATAAATGTTATTATTATTATTGATATTACTATTGCCGTCAACACAAAATATTATCATCACCATCTTTATACTATTGTTATTATTACTACTGTTATTATTATTATTACTGATATTACTGTTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112442 lncRNA downstream 188 9325167 ~ 9325698 (-) True G98809
TU112430 lncRNA downstream 1391 9322852 ~ 9324495 (-) True G98802
TU112429 lncRNA downstream 5677 9317571 ~ 9320209 (-) False G98802
TU112468 lncRNA downstream 11881 9313575 ~ 9314005 (-) True G98834
TU112465 lncRNA downstream 14676 9310991 ~ 9311210 (-) True G98831
TU112441 lncRNA upstream 18364 9344604 ~ 9345448 (-) True G98808
TU112490 lncRNA upstream 30122 9356362 ~ 9397519 (-) True G98853
TU112509 lncRNA upstream 149293 9475533 ~ 9475793 (-) True CI01000016_09475913_09487996
TU112515 lncRNA upstream 154154 9480394 ~ 9480627 (-) True G98878
TU112522 lncRNA upstream 163325 9489565 ~ 9489806 (-) True G98885
CI01000016_09251602_09253351.mRNA mRNA downstream 72535 9251412 ~ 9253351 (-) True CI01000016_09251602_09253351
CI01000016_09224593_09226660.mRNA mRNA downstream 99226 9224467 ~ 9226660 (-) True CI01000016_09224593_09226660
CI01000016_09212039_09212358.mRNA mRNA downstream 112716 9211997 ~ 9213170 (-) True CI01000016_09212039_09212358
CI01000016_09185530_09205841.mRNA mRNA downstream 119852 9185404 ~ 9206034 (-) True CI01000016_09185530_09205841
CI01000016_09164404_09171973.mRNA mRNA downstream 151128 9164404 ~ 9174758 (-) True CI01000016_09164404_09171973
CI01000016_09376209_09382250.mRNA mRNA upstream 49969 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09384358_09401878.mRNA mRNA upstream 57922 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09410080_09416286.mRNA mRNA upstream 83666 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09475913_09487996.mRNA mRNA upstream 148757 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09510177_09512196.mRNA mRNA upstream 183419 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
TU112308 other downstream 68275 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 85957 9234996 ~ 9239929 (-) True G98679
TU112294 other downstream 380657 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 431149 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 3166165 6158986 ~ 6159721 (-) True G97341
TU112534 other upstream 183382 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 183411 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 183411 9511357 ~ 9511415 (-) True G98896
TU112845 other upstream 488121 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 724928 10051168 ~ 10052389 (-) True G100190

Expression Profile