RNA id: TU112537


Basic Information

Item Value
RNA id TU112537
length 234
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G98898
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9513765 ~ 9513998 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGTACTGATTTCTTTTTGTTTTACAAAATGGCTTTCCTACTGTTATTAGAAATATTTTTCAGTTCACTGATGTAGCTTCCATATTTCCAAGCACGTTAATGATATAAATATATATTTTTATGGCAGCACTTTATAATAGTTGTCAACAGGCCATTACTTCATGTTCATTTATACTACAGGGTTGTTGAATGCTCAATTCGGTTGCCAAACATTCTAAGGTGTGCAGTTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112524 lncRNA downstream 19826 9493643 ~ 9493939 (-) True G98887
TU112522 lncRNA downstream 23959 9489565 ~ 9489806 (-) True G98885
TU112515 lncRNA downstream 33138 9480394 ~ 9480627 (-) True G98878
TU112509 lncRNA downstream 37972 9475533 ~ 9475793 (-) True CI01000016_09475913_09487996
TU112490 lncRNA downstream 116246 9356362 ~ 9397519 (-) True G98853
TU112540 lncRNA upstream 4381 9518379 ~ 9518655 (-) True G98901
TU112545 lncRNA upstream 9030 9523028 ~ 9523298 (-) True G98906
TU112553 lncRNA upstream 20524 9534522 ~ 9534762 (-) True G98914
TU112732 lncRNA upstream 27027 9541025 ~ 9541287 (-) True G99078
TU112727 lncRNA upstream 46162 9560160 ~ 9560642 (-) True G99073
CI01000016_09510177_09512196.mRNA mRNA downstream 1400 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 25473 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09410080_09416286.mRNA mRNA downstream 95998 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09384358_09401878.mRNA mRNA downstream 111887 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09376209_09382250.mRNA mRNA downstream 131515 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09638800_09651752.mRNA mRNA upstream 124594 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09654611_09661197.mRNA mRNA upstream 139504 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09739013_09746676.mRNA mRNA upstream 225015 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09959197_09962175.mRNA mRNA upstream 443924 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 511504 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
TU112535 other downstream 1337 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 1403 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 1403 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 256154 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 273836 9234996 ~ 9239929 (-) True G98679
TU112845 other upstream 300363 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 537170 10051168 ~ 10052389 (-) True G100190

Expression Profile