RNA id: TU112553


Basic Information

Item Value
RNA id TU112553
length 241
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G98914
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9534522 ~ 9534762 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCGTTCAGATCAAAAGCCAACATCTCTGATGGTATGGGGGTGCATAAGTGCATACGGTATGGGCAGCTTGCATGTTTTGGAAGGCACTATGAATGCTGAAAGGTATATAAAGGTTTTAGAGCAACATATGCTCCCCTCCAGATGATGTCTATTTCAGGGAAGGCCTTGTGTATTTCAGCAGGACAATGCAAAACCACATACTGCAGCTATTACAACAGCATGGCTTCGTCGTAGAAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112545 lncRNA downstream 11224 9523028 ~ 9523298 (-) True G98906
TU112540 lncRNA downstream 15867 9518379 ~ 9518655 (-) True G98901
TU112537 lncRNA downstream 20524 9513765 ~ 9513998 (-) True G98898
TU112524 lncRNA downstream 40583 9493643 ~ 9493939 (-) True G98887
TU112522 lncRNA downstream 44716 9489565 ~ 9489806 (-) True G98885
TU112732 lncRNA upstream 6263 9541025 ~ 9541287 (-) True G99078
TU112727 lncRNA upstream 25398 9560160 ~ 9560642 (-) True G99073
TU112736 lncRNA upstream 36461 9571223 ~ 9571509 (-) True G99082
TU112739 lncRNA upstream 38405 9573167 ~ 9573451 (-) True G99085
TU112759 lncRNA upstream 47376 9582138 ~ 9582609 (-) True G99101
CI01000016_09510177_09512196.mRNA mRNA downstream 22157 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 46230 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09410080_09416286.mRNA mRNA downstream 116755 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09384358_09401878.mRNA mRNA downstream 132644 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09376209_09382250.mRNA mRNA downstream 152272 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09638800_09651752.mRNA mRNA upstream 103830 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09654611_09661197.mRNA mRNA upstream 118740 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09739013_09746676.mRNA mRNA upstream 204251 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09959197_09962175.mRNA mRNA upstream 423160 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 490740 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
TU112535 other downstream 22094 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 22160 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 22160 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 276911 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 294593 9234996 ~ 9239929 (-) True G98679
TU112845 other upstream 279599 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 516406 10051168 ~ 10052389 (-) True G100190

Expression Profile