RNA id: TU112727


Basic Information

Item Value
RNA id TU112727
length 483
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G99073
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9560160 ~ 9560642 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACGTTCCCTATAACCTATATAGTGCGCTATTAGATTTTAGAGAGCATTTGATTGGACAGAAAATCTGATGAGAAGCTCAAGTACAGGGTGATGTCATCAAAATTGTTGATCCATATCGGTGGAAGCGAGAGACTGTAAGTTTTGAATGCTTATATCTTCTTAATACGAATTTTGTCATTGTTTTGGAGTACATTGGCTTATAGGCTAACATATTCATAAAAGCCAAAAAACTCAAATTTTGATTTCATGGCGACTTTAAATGTCACTCTGTTCTTCATACAAAGTGATTGTATCTCTTCGGAAGACTTTGATTAAACCATTGGAGTTGTATAGATCAAATTTATGCTGTCATTATGTCCTTTTTAGCATTTAAAAGTTTTGGGCCCAATTGACTTTCATTGGTTAAAAACAGTTGAAAAATTCTCCCAAAAAATATTTTCTTTTGTGTTCTGCAGAAGAAAGAAAATCATAACGACACGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112732 lncRNA downstream 18873 9541025 ~ 9541287 (-) True G99078
TU112553 lncRNA downstream 25398 9534522 ~ 9534762 (-) True G98914
TU112545 lncRNA downstream 36862 9523028 ~ 9523298 (-) True G98906
TU112540 lncRNA downstream 41505 9518379 ~ 9518655 (-) True G98901
TU112537 lncRNA downstream 46162 9513765 ~ 9513998 (-) True G98898
TU112736 lncRNA upstream 10581 9571223 ~ 9571509 (-) True G99082
TU112739 lncRNA upstream 12525 9573167 ~ 9573451 (-) True G99085
TU112759 lncRNA upstream 21496 9582138 ~ 9582609 (-) True G99101
TU112780 lncRNA upstream 43204 9603846 ~ 9604471 (-) True G99119
TU112823 lncRNA upstream 187748 9748390 ~ 9749073 (-) True G99156
CI01000016_09510177_09512196.mRNA mRNA downstream 47795 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 71868 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09410080_09416286.mRNA mRNA downstream 142393 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09384358_09401878.mRNA mRNA downstream 158282 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09376209_09382250.mRNA mRNA downstream 177910 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09638800_09651752.mRNA mRNA upstream 77950 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09654611_09661197.mRNA mRNA upstream 92860 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09739013_09746676.mRNA mRNA upstream 178371 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09959197_09962175.mRNA mRNA upstream 397280 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 464860 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
TU112535 other downstream 47732 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 47798 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 47798 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 302549 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 320231 9234996 ~ 9239929 (-) True G98679
TU112845 other upstream 253719 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 490526 10051168 ~ 10052389 (-) True G100190

Expression Profile