RNA id: TU112592


Basic Information

Item Value
RNA id TU112592
length 240
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G98953
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9597475 ~ 9597714 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACAGTGTCACGCAGGAAAACTTTAAATATCTCCAAAAAGACATAAAAAAAACTAAACAAATGATTTACAAGTTTAACATGCATTTATCAAAGTAGGAAATCCACACTTTTAATCCTTCACACACAATTAGTGCTCTTGAAATACGAAATGGAGGCGGGTCCGGATTGAATTCCCTCTGAATCCGGACCGGAGTCCGGACTTTGAGAACCCCTGCCCTAAACCAAACCCTAGTCCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112589 lncRNA upstream 10162 9587112 ~ 9587313 (+) True G98950
TU112588 lncRNA upstream 10907 9586229 ~ 9586568 (+) True G98949
TU112574 lncRNA upstream 29264 9567985 ~ 9568211 (+) True G98935
TU112571 lncRNA upstream 34016 9563160 ~ 9563459 (+) True G98932
TU112568 lncRNA upstream 40881 9556357 ~ 9556594 (+) True G98929
TU112661 lncRNA downstream 150269 9747983 ~ 9748261 (+) True G99013
TU112671 lncRNA downstream 168264 9765978 ~ 9769724 (+) True G99022
TU112672 lncRNA downstream 172151 9769865 ~ 9773224 (+) True G99023
TU112673 lncRNA downstream 187896 9785610 ~ 9786563 (+) True G99024
TU112683 lncRNA downstream 258798 9856512 ~ 9856848 (+) True G99034
CI01000016_09524279_09527107.mRNA mRNA upstream 70268 9523617 ~ 9527207 (+) True CI01000016_09524279_09527107
CI01000016_09364728_09366356.mRNA mRNA upstream 231119 9364649 ~ 9366356 (+) True CI01000016_09364728_09366356
CI01000016_09363759_09363932.mRNA mRNA upstream 233102 9363759 ~ 9364373 (+) True CI01000016_09363759_09363932
CI01000016_09357617_09361063.mRNA mRNA upstream 236412 9357617 ~ 9361063 (+) True CI01000016_09357617_09361063
CI01000016_09340494_09349036.mRNA mRNA upstream 248439 9340494 ~ 9349036 (+) True CI01000016_09340494_09349036
CI01000016_09615039_09616082.mRNA mRNA downstream 15077 9612791 ~ 9617419 (+) True CI01000016_09615039_09616082
CI01000016_09663511_09664293.mRNA mRNA downstream 65797 9663511 ~ 9664495 (+) True CI01000016_09663511_09664293
CI01000016_09664848_09674309.mRNA mRNA downstream 67134 9664848 ~ 9674728 (+) True CI01000016_09664848_09674309
CI01000016_09686132_09706397.mRNA mRNA downstream 88418 9686132 ~ 9706453 (+) True CI01000016_09686132_09706397
CI01000016_09731997_09734823.mRNA mRNA downstream 134283 9731997 ~ 9734823 (+) True CI01000016_09731997_09734823
TU111822 other upstream 594758 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1581700 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 1811752 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2436185 7160641 ~ 7161290 (+) True G96389
TU109031 other upstream 4189612 5406748 ~ 5406829 (+) True G95870
TU112665 other downstream 197917 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 326704 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 636686 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 696677 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 2073931 11671645 ~ 11672873 (+) True G99940

Expression Profile