RNA id: TU112780


Basic Information

Item Value
RNA id TU112780
length 626
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G99119
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9603846 ~ 9604471 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTCACTGGCTATGTTTACATGCACCAATTTTCGTCAATCCGAATGAATTAAATCTGCAGATCCGTTTACATGTACTCTAAACTGTAATCTGATTCAAATATCTGTTTATATGTGTTTTATATACATTCCGATTAAAACTTTTGCGCACGCGCTCTGCATGTGACGTCATATCAATCACACTTGCAGAGACGACCATGGACGTGACACCAACAGAGCTTATCATTATTTTTGCCCTGTTGGCATACACATTCATAAATCAGCAACAGTTTTTAGATAAAAAGACGTGAACGTGAACTTTTGCACTGTGTAATGTGTGTCAACATTGCACTGCGCACGTGGCCGTGGCCCAGAGACTTCTGAATACGATTGAGAAAGTAGTCGGATTCAAGCATTTACATGGTCATTTTTTGCTGTTGGATCGGATTAGAAAAGGAATAAATCACCCCTTCCAATCCTATCGCAATTTCATTCAGATCGAGCTCAATCGGATCGATTAAGGTGTTTACATGAACGTTTTTCAATCCGATTGAGCCATCAGTCCGATTACAAATGGATTATTTGGGTGCACGTAAACGTAGCCACTGAGCCATCGGATTTGATCAGAAATATCTTAATTTGTGTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112759 lncRNA downstream 21237 9582138 ~ 9582609 (-) True G99101
TU112739 lncRNA downstream 30395 9573167 ~ 9573451 (-) True G99085
TU112736 lncRNA downstream 32337 9571223 ~ 9571509 (-) True G99082
TU112727 lncRNA downstream 43204 9560160 ~ 9560642 (-) True G99073
TU112732 lncRNA downstream 62559 9541025 ~ 9541287 (-) True G99078
TU112823 lncRNA upstream 143919 9748390 ~ 9749073 (-) True G99156
TU112743 lncRNA upstream 184840 9789311 ~ 9793229 (-) True G99087
TU112840 lncRNA upstream 194481 9798952 ~ 9799672 (-) True G99173
TU112847 lncRNA upstream 200845 9805316 ~ 9805914 (-) True G99180
TU112858 lncRNA upstream 221419 9825890 ~ 9835996 (-) True G99189
CI01000016_09510177_09512196.mRNA mRNA downstream 91481 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 115554 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09410080_09416286.mRNA mRNA downstream 186079 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09384358_09401878.mRNA mRNA downstream 201968 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09376209_09382250.mRNA mRNA downstream 221596 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09638800_09651752.mRNA mRNA upstream 34121 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09654611_09661197.mRNA mRNA upstream 49031 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09739013_09746676.mRNA mRNA upstream 134542 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09959197_09962175.mRNA mRNA upstream 353451 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 421031 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
TU112535 other downstream 91418 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 91484 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 91484 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 346235 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 363917 9234996 ~ 9239929 (-) True G98679
TU112845 other upstream 209890 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 446697 10051168 ~ 10052389 (-) True G100190

Expression Profile