RNA id: TU112743


Basic Information

Item Value
RNA id TU112743
length 2009
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G99087
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9789311 ~ 9793229 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAAATGTTTATTCAGTAGTGTTTTTTATGAAATACAATACTGTTTCTGTAATTCTGTGACATTACCACTCATCACATTCCTCCAGTTCCAGCTTTTAACATCATTCCGATGCACAAATGTCCTCAAATCCCTGTAGAACTGTTTCAGAACAGTAGGCACTTCAAGGGCTTCTAAAACATTTGTGAATATACATTTTCATAGATTTTTTTAACTAACATATTACATATAATATGTAGTATATAAATAATTATATTCTATAAATTATTGTATATTAACATATACAGAGACGTCGTTGACTCTAAATGGTCAGGTCTTTAAAAGAAACATTTGAAATGCACATGAAAAGAAGAGTAAAAATGAGCAGATGTGATTCATGTTATTAATCATCATCACTGTTAACAACACTGTTTGAGTCTTTGGAAGGTCAGAGACATTCAGCAGAATATGCTCGAGTCAGAAACTAAAGAGAAATCATTTTAAAAGCTGCTTCCACATGAGGGATAATATTATGAAATAAAGAAAAATGGCCTTCATTAGGGTTTCAGTCAACAGTGAACGTTGAAAAAGTGTCGATTGAGAAGAGTGTGGGCGTAAAAATCAGTAAAAATGCAGACTTTTACTGGGTAAATGACATTAACCTGTCATGGAAGATTCATTCTTGGACTCACTACATTTGTTCATAATCCATATCTTATTCAAATGAACTTTTTTTCCTTCTAAGTGTTGGGTAACTAGATATCAAAATGTTTTTTTTGGTCGGGGGGTGACCTTGATAAGCTTGTGTCCAATGTAGACTTATATCATGGTTAAAGTAATTTTAATAATTTAAGTCATTTACTGCGGTATTCAAGGATGCTATGAATGGAGGCATGGCAGACTTTGATGAAACAGTCTACTGATTTTCCTAAGAGACAGAAAAAGAGAGAATGAAGGAGCACAAGTATTGAGGAATGTGTTCTTGGGTTTAGACAATGTAGAATTTGAACTTTCAGGGACTTAACACTGTACCAACTACATTAGAATCATGAAAAATAACAAAAGACATTTAAACATTCTGTAGTATGCTGTGATGTTTGAATGATTTCATATTGGCCAGACGAAAATACACACATTCAGTTTGACTGAAGAACATAAGGGCACAAGGCAAAGGAGAAAAAAACGTTTACAAACATGATGAGATGATGAAAATGAAATTATTGATAAAGTCCACACTGAGATAAGTTACTGAAATGTAATCAGTGAAAAAAATTAAAGGTCTCAGATATAACCCAGGATTTCCACCCTGGAATTGTCTTGTTCTTTAATAAAACATACCTCTACTGTTATAAAGTAGTCAATGACTAAAACCTGTGAGAAATGATTTACTTTCATACACTGACAACAACTGTTTTCAAAAACCATAGAGAAACAATCTTTGACATTTTTTGATCCCAAAAAAGAAAATACAAGCCCCGTTTGTGAAGCAAAATTACGTTTTTGTTACATTTTTAAATAAGTAAAGGTTCCCCGTAAAAAATCCCCTCGATGTGCTACCGATCCACCATTACTCTCGGAGAGGAGTTGGTTGTCATAATGATGTTACTGTTGGCAATGATTGGTCATTCAGGCGTAGAACTCTTTACTCGGAGCCTTCTGATAGGCTGAGCTGGGTGGCTTGCGCTCTCCAAGGTCATAGCTGCCCTCATCCTTCTTTCTCATACGGTACACCAGAAGGAGGATCAGGAAAATGGCAAACAGGAAGCCAATCACTCCACCCGCTATAACCGCTGTGCCAGCACTTCTGTCCTTTGGAAGAGATTTTCTGTTCGAACCTCATGAAGTGGGTCAGCTTCTTGTACAACACTCGGTGAGCTGGTGGCTTCAACAGTGACCTGGGGCTTTTCTGTCGGATAGTTAGAGATCTAAAAAACAGTGAGAGAGAAAGACAGCTTAACATCAAAATTGCTGACACAAAAAACAATTCAGCTTGTAGATAGTGTCGGAAAAAGTGAAGACATTCAATAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112823 lncRNA downstream 40238 9748390 ~ 9749073 (-) True G99156
TU112780 lncRNA downstream 184840 9603846 ~ 9604471 (-) True G99119
TU112759 lncRNA downstream 206702 9582138 ~ 9582609 (-) True G99101
TU112739 lncRNA downstream 215860 9573167 ~ 9573451 (-) True G99085
TU112736 lncRNA downstream 217802 9571223 ~ 9571509 (-) True G99082
TU112840 lncRNA upstream 5723 9798952 ~ 9799672 (-) True G99173
TU112847 lncRNA upstream 12087 9805316 ~ 9805914 (-) True G99180
TU112858 lncRNA upstream 32661 9825890 ~ 9835996 (-) True G99189
TU112870 lncRNA upstream 58977 9852206 ~ 9852437 (-) True G99201
TU112873 lncRNA upstream 62393 9855622 ~ 9855829 (-) True G99204
CI01000016_09739013_09746676.mRNA mRNA downstream 42635 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 128114 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 137559 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09510177_09512196.mRNA mRNA downstream 276946 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 301019 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_09959197_09962175.mRNA mRNA upstream 164693 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_10025722_10027148.mRNA mRNA upstream 232273 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_10089136_10135299.mRNA mRNA upstream 295487 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10228314_10299064.mRNA mRNA upstream 435085 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 592596 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
TU112535 other downstream 276883 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 276949 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 276949 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 531700 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 549382 9234996 ~ 9239929 (-) True G98679
TU112845 other upstream 21132 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 257939 10051168 ~ 10052389 (-) True G100190

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU163810 True 2511 lncRNA 0.39 2 NC_056714.1 9187880 ~ 9191339 (-)