RNA id: TU112683


Basic Information

Item Value
RNA id TU112683
length 337
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G99034
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9856512 ~ 9856848 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGCCATGTGATTGGCTGATTAGATATTTGCGTTAATGAGCAAAGGTACAGGTGTACCGGTAACACTTTATTTTAAGGTCCTTTAACTAGTTGCTTATTGGCATGCATATTACTGGAATATTGGCTATTTATTAGTACTTATTAAGCAGATATTAATGCCTTATTCTGCATGACCTTATTCTACATTCCTAATCCTACCCAATACCTAAATGTAACAACTACCTTACTAACTATTAATAAGCAGTAAATTACGAGTTTATTGAGAGAAAAGTCGTAGTTAATAGTTTATATGTGTTCCCTATACTAAAGTGTTACCGGTGTACTTAATAAAGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112673 lncRNA upstream 69949 9785610 ~ 9786563 (+) True G99024
TU112672 lncRNA upstream 83288 9769865 ~ 9773224 (+) True G99023
TU112671 lncRNA upstream 86788 9765978 ~ 9769724 (+) True G99022
TU112661 lncRNA upstream 108251 9747983 ~ 9748261 (+) True G99013
TU112592 lncRNA upstream 258798 9597475 ~ 9597714 (+) True G98953
TU112689 lncRNA downstream 7155 9864003 ~ 9864223 (+) True G99040
TU112706 lncRNA downstream 42705 9899553 ~ 9900079 (+) False G99056
TU112705 lncRNA downstream 42807 9899655 ~ 9900079 (+) True G99056
TU112715 lncRNA downstream 63419 9920267 ~ 9920479 (+) True G99062
TU112716 lncRNA downstream 64333 9921181 ~ 9940824 (+) True G99063
CI01000016_09796196_09842235.mRNA mRNA upstream 13936 9795950 ~ 9842576 (+) False CI01000016_09796196_09842235
CI01000016_09788926_09791625.mRNA mRNA upstream 64589 9788926 ~ 9791923 (+) True CI01000016_09788926_09791625
CI01000016_09748780_09759954.mRNA mRNA upstream 96129 9748780 ~ 9760383 (+) True CI01000016_09748780_09759954
CI01000016_09731997_09734823.mRNA mRNA upstream 121689 9731997 ~ 9734823 (+) True CI01000016_09731997_09734823
CI01000016_09686132_09706397.mRNA mRNA upstream 150059 9686132 ~ 9706453 (+) True CI01000016_09686132_09706397
CI01000016_09868120_09886212.mRNA mRNA downstream 11228 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_09897221_09902690.mRNA mRNA downstream 39998 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09934128_09954587.mRNA mRNA downstream 77280 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09970010_09999304.mRNA mRNA downstream 113067 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_10042324_10051398.mRNA mRNA downstream 185168 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
TU112665 other upstream 59572 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 853795 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1840737 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2070789 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2695222 7160641 ~ 7161290 (+) True G96389
TU112690 other downstream 67570 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 377552 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 437543 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1814797 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 2303793 12160641 ~ 12162845 (+) False G100178

Expression Profile