RNA id: TU112705


Basic Information

Item Value
RNA id TU112705
length 425
lncRNA type intronic
GC content 0.44
exon number 1
gene id G99056
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9899553 ~ 9900079 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATATCATCCAAAGATTCAGAGAATCTGGAACAATCTCTGTGCGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCGTGATCTTCGGGCCCTTAGATGGCACTGCATCACATACAGGAATGCTACTGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACATAGTCGGTGAACACAATCCACCGTGCCATTCGCTGTTGCCGGCTAAAACTCTATAGGTCAAAAAAGAAGCCATATCTAAACATGATCCAGAAGCGCAGGCGTTTTCTTTGGGCCAAGGCTCATTTAAAATGGACTGTGGCAAAGTGGAAAACTGTTCTGTGGTCAGACGAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGATGCCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112689 lncRNA upstream 35432 9864003 ~ 9864223 (+) True G99040
TU112683 lncRNA upstream 42807 9856512 ~ 9856848 (+) True G99034
TU112673 lncRNA upstream 113092 9785610 ~ 9786563 (+) True G99024
TU112672 lncRNA upstream 126431 9769865 ~ 9773224 (+) True G99023
TU112671 lncRNA upstream 129931 9765978 ~ 9769724 (+) True G99022
TU112715 lncRNA downstream 20188 9920267 ~ 9920479 (+) True G99062
TU112716 lncRNA downstream 21102 9921181 ~ 9940824 (+) True G99063
TU112942 lncRNA downstream 70662 9970741 ~ 9971353 (+) False CI01000016_09970010_09999304
TU112943 lncRNA downstream 70662 9970741 ~ 9971291 (+) True CI01000016_09970010_09999304
TU112986 lncRNA downstream 168165 10068244 ~ 10068606 (+) True G99281
CI01000016_09868120_09886212.mRNA mRNA upstream 13422 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_09796196_09842235.mRNA mRNA upstream 57079 9795950 ~ 9842576 (+) False CI01000016_09796196_09842235
CI01000016_09788926_09791625.mRNA mRNA upstream 107732 9788926 ~ 9791923 (+) True CI01000016_09788926_09791625
CI01000016_09748780_09759954.mRNA mRNA upstream 139272 9748780 ~ 9760383 (+) True CI01000016_09748780_09759954
CI01000016_09731997_09734823.mRNA mRNA upstream 164832 9731997 ~ 9734823 (+) True CI01000016_09731997_09734823
CI01000016_09934128_09954587.mRNA mRNA downstream 34049 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09970010_09999304.mRNA mRNA downstream 69836 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_10042324_10051398.mRNA mRNA downstream 141937 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_10333877_10334229.mRNA mRNA downstream 433798 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 435179 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
TU112665 other upstream 102715 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 896938 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1883880 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2113932 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2738365 7160641 ~ 7161290 (+) True G96389
TU112690 other downstream 24339 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 334321 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 394312 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1771566 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 2260562 12160641 ~ 12162845 (+) False G100178

Expression Profile