RNA id: TU112715


Basic Information

Item Value
RNA id TU112715
length 213
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G99062
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9920267 ~ 9920479 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGCACCCCAGCAAACCACTTTTCCAGTCATTCGTTCTGCTTAGGAGCAGCAACCACAGCTGCCCAAAAAGGCCTTTCCCAGAATCAGATTCAAACACTTGGTCGCTGGTCATCAGAAGCTTTTTAAGAACTACACCCGATCAAATCGCTTCCACATTAAAGAAGCCCAACGAACCCTTATCAGCTAAGTTTTCAGCTCCAGCTTGTTCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112706 lncRNA upstream 20188 9899553 ~ 9900079 (+) False G99056
TU112705 lncRNA upstream 20188 9899655 ~ 9900079 (+) True G99056
TU112689 lncRNA upstream 56044 9864003 ~ 9864223 (+) True G99040
TU112683 lncRNA upstream 63419 9856512 ~ 9856848 (+) True G99034
TU112673 lncRNA upstream 133704 9785610 ~ 9786563 (+) True G99024
TU112716 lncRNA downstream 702 9921181 ~ 9940824 (+) True G99063
TU112942 lncRNA downstream 50262 9970741 ~ 9971353 (+) False CI01000016_09970010_09999304
TU112943 lncRNA downstream 50262 9970741 ~ 9971291 (+) True CI01000016_09970010_09999304
TU112986 lncRNA downstream 147765 10068244 ~ 10068606 (+) True G99281
TU112988 lncRNA downstream 149426 10069905 ~ 10070116 (+) True G99283
CI01000016_09897221_09902690.mRNA mRNA upstream 17385 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 34034 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_09796196_09842235.mRNA mRNA upstream 77691 9795950 ~ 9842576 (+) False CI01000016_09796196_09842235
CI01000016_09788926_09791625.mRNA mRNA upstream 128344 9788926 ~ 9791923 (+) True CI01000016_09788926_09791625
CI01000016_09748780_09759954.mRNA mRNA upstream 159884 9748780 ~ 9760383 (+) True CI01000016_09748780_09759954
CI01000016_09934128_09954587.mRNA mRNA downstream 13649 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09970010_09999304.mRNA mRNA downstream 49436 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_10042324_10051398.mRNA mRNA downstream 121537 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_10333877_10334229.mRNA mRNA downstream 413398 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 414779 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
TU112665 other upstream 123327 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 917550 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1904492 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2134544 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2758977 7160641 ~ 7161290 (+) True G96389
TU112690 other downstream 3939 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 313921 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 373912 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1751166 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 2240162 12160641 ~ 12162845 (+) False G100178

Expression Profile