RNA id: TU112716


Basic Information

Item Value
RNA id TU112716
length 314
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G99063
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9921181 ~ 9940824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCAGAGCCAGCAAAAGCTATGAAAATGGTGACTGTTTATCTCACAGAGTAAGATGCAGCCTGCAGAAATGACATGCATGGTTGTTGTTCTCACTGGAACTACTTACTGTAGCCAAAGCACAATAAAGTCAGTTAGCCATTTCCAAAGCCCATATTTACAAAATATAGATTCTGGGAATCAATACTCTGGTCTCATGAGACCAAATCAATAATTTTGGATCTAACAGCATCCAAAATGTTATGGTGTTGCTAGAGGAGGAGTACAGTGAGAAGTGCCTGGTTCCCACAGTAAAGTTCAGTGGTAGCAAAGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112715 lncRNA upstream 702 9920267 ~ 9920479 (+) True G99062
TU112706 lncRNA upstream 21102 9899553 ~ 9900079 (+) False G99056
TU112705 lncRNA upstream 21102 9899655 ~ 9900079 (+) True G99056
TU112689 lncRNA upstream 56958 9864003 ~ 9864223 (+) True G99040
TU112683 lncRNA upstream 64333 9856512 ~ 9856848 (+) True G99034
TU112942 lncRNA downstream 29917 9970741 ~ 9971353 (+) False CI01000016_09970010_09999304
TU112943 lncRNA downstream 29917 9970741 ~ 9971291 (+) True CI01000016_09970010_09999304
TU112986 lncRNA downstream 127420 10068244 ~ 10068606 (+) True G99281
TU112988 lncRNA downstream 129081 10069905 ~ 10070116 (+) True G99283
TU112989 lncRNA downstream 129295 10070119 ~ 10070348 (+) True G99284
CI01000016_09897221_09902690.mRNA mRNA upstream 18299 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 34948 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_09796196_09842235.mRNA mRNA upstream 78605 9795950 ~ 9842576 (+) False CI01000016_09796196_09842235
CI01000016_09788926_09791625.mRNA mRNA upstream 129258 9788926 ~ 9791923 (+) True CI01000016_09788926_09791625
CI01000016_09748780_09759954.mRNA mRNA upstream 160798 9748780 ~ 9760383 (+) True CI01000016_09748780_09759954
CI01000016_09970010_09999304.mRNA mRNA downstream 29091 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_10042324_10051398.mRNA mRNA downstream 101192 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_10333877_10334229.mRNA mRNA downstream 393053 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
CI01000016_10339126_10370881.mRNA mRNA downstream 394434 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 479751 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
TU112665 other upstream 124241 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 918464 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1905406 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2135458 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2759891 7160641 ~ 7161290 (+) True G96389
TU113122 other downstream 293576 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 353567 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1730821 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 2219817 12160641 ~ 12162845 (+) False G100178

Expression Profile